{"id":"JGAD000465","research":"hum0295","url":"https://humandbs.dbcls.jp/dataset/JGAD000465","datePublished":"2024-11-05","dateModified":"2024-11-05","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Amplicon-seq）","en":"NGS (Amplicon-seq)"}}],"experiments":[{"label":"RNA Amplicon-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"悪性黒色腫（ICD10：C21.0、C30.0、C31.9、C43.1、C43.3、C43.4、C43.5、C43.6、C43.7、C51.1、C52、C53.9、C60.9、C67.9、C69.0）：98症例\n腫瘍組織：121検体（原発巣1検体：65例、原発巣2検体：2例、転移巣1検体：10例、原発巣と転移巣の両方：21例）\n非腫瘍組織：98検体（末梢血もしくは唾液）\n脂腺母斑（ICD10：D23.7）：1症例\n腫瘍組織：3検体（脂腺母斑、毛芽種、汗孔腫）","en":"melanoma (ICD10: C21.0, C30.0, C31.9, C43.1, C43.3, C43.4, C43.5, C43.6, C43.7, C51.1, C52, C53.9, C60.9, C67.9, C69.0): 98 cases\ntumor tissues: 121 samples (one primary tumor sample: 65 cases, two primary tumor samples: 2 cases, metastatic lesion only: 10 cases, both primary and metastatic samples: 21 cases)\nnon-tumor tissues: 98 samples (blood or saliva)\nsebaceous nevus (ICD10: D23.7): 1 case\ntumor tissues: 3 samples (sebaceous nevus, trichoblastoma and poroma)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C210","label":{"ja":"肛門，部位不明","en":"Malignant neoplasm: Anus, unspecified"}},{"code":"C300","label":{"ja":"鼻腔","en":"Malignant neoplasm: Nasal cavity"}},{"code":"C319","label":{"ja":"副鼻腔，部位不明","en":"Malignant neoplasm: Accessory sinus, unspecified"}},{"code":"C431","label":{"ja":"眼瞼の悪性黒色腫，眼角を含む","en":"Malignant neoplasm: Malignant melanoma of eyelid, including canthus"}},{"code":"C433","label":{"ja":"その他及び部位不明の顔面の悪性黒色腫","en":"Malignant neoplasm: Malignant melanoma of other and unspecified parts of face"}},{"code":"C434","label":{"ja":"頭皮及び頚部の悪性黒色腫","en":"Malignant neoplasm: Malignant melanoma of scalp and neck"}},{"code":"C435","label":{"ja":"体幹の悪性黒色腫","en":"Malignant neoplasm: Malignant melanoma of trunk"}},{"code":"C436","label":{"ja":"上肢の悪性黒色腫，肩を含む","en":"Malignant neoplasm: Malignant melanoma of upper limb, including shoulder"}},{"code":"C437","label":{"ja":"下肢の悪性黒色腫，股関節部を含む","en":"Malignant neoplasm: Malignant melanoma of lower limb, including hip"}},{"code":"C511","label":{"ja":"小陰唇","en":"Malignant neoplasm: Labium minus"}},{"code":"C52","label":{"ja":"腟の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of vagina"}},{"code":"C539","label":{"ja":"子宮頚（部），部位不明","en":"Malignant neoplasm: Cervix uteri, unspecified"}},{"code":"C609","label":{"ja":"陰茎，部位不明","en":"Malignant neoplasm: Penis, unspecified"}},{"code":"C679","label":{"ja":"膀胱，部位不明","en":"Malignant neoplasm: Bladder, unspecified"}},{"code":"C690","label":{"ja":"結膜","en":"Malignant neoplasm: Conjunctiva"}}],"name":{"ja":"悪性黒色腫","en":"melanoma"}},{"terms":[{"code":"D237","label":{"ja":"下肢の皮膚，股関節部を含む","en":"Benign neoplasm: Skin of lower limb, including hip"}}],"name":{"ja":"脂腺母斑","en":"sebaceous nevus"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":99,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から抽出したDNA","en":"DNAs extracted from tumor tissues and non-tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"saliva","label":{"ja":"唾液","en":"Saliva"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"amplicon-seq","label":{"en":"Amplicon-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"95遺伝子","en":"95 genes"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ion-ampliseq-library-kit-plus","label":{"en":"Ion AmpliSeq Library Kit Plus"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"PCR","en":"PCR"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"thermo-fisher-scientific-ion-s5","label":{"en":"Thermo Fisher Scientific Ion S5"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":200,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":311794090596,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}