{"id":"JGAD000390","research":"hum0267","url":"https://humandbs.dbcls.jp/dataset/JGAD000390","datePublished":"2025-02-17","dateModified":"2025-02-17","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肉腫が疑われた小児（ICD10）：47症例\n横紋筋肉腫（C499）19例、Ewing肉腫（C419）8例、未分化肉腫（C499）5例、悪性ラブドイド腫瘍（C809）3例、上衣腫（C719）2例、腎明細胞肉腫（C64）、胎児性横紋筋型腎芽腫（C64）、炎症性筋線維芽細胞性腫瘍（-）、ランゲルハンス細胞組織球症（C966）、脂肪肉腫（C499）、悪性末梢神経鞘腫（C479）、神経芽腫（C749）、NUT carcinoma（C80.9）、皮下脂肪識炎様T細胞リンパ腫（C863）、滑膜肉腫（C499）各1例","en":"47 children who suspected of sarcoma (ICD10)\nRhabdomyosarcoma (C499): 19, Ewing sarcoma (C419): 8, Undifferentiated sarcoma (C499): 5, Malignant rhabdoid tumor (C809): 3, Myxopapillary ependymoma (C719): 2, Clear cell sarcoma of the kidney (C64), Fetal rhabdomyomatous Nephroblastoma (C64), Inflammatory myofibroblastic tumor (-), Langerhans cell histiocytosis (C966), Liposarcoma (C499), Malignant peripheral nerve sheath tumor (C479), Neuroblastoma (C749), NUT carcinoma (C80.9), Subcutaneous panniculitis-like T-cell lymphoma (C863), Synovial sarcoma (C499): 1 case each"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C499","label":{"ja":"結合組織及び軟部組織，部位不明","en":"Malignant neoplasm: Connective and soft tissue, unspecified"}}],"name":{"ja":"横紋筋肉腫","en":"Rhabdomyosarcoma"}},{"terms":[{"code":"C419","label":{"ja":"骨及び関節軟骨，部位不明","en":"Malignant neoplasm: Bone and articular cartilage, unspecified"}}],"name":{"ja":"Ewing肉腫","en":"Ewing sarcoma"}},{"terms":[{"code":"C499","label":{"ja":"結合組織及び軟部組織，部位不明","en":"Malignant neoplasm: Connective and soft tissue, unspecified"}}],"name":{"ja":"未分化肉腫","en":"Undifferentiated sarcoma"}},{"terms":[{"code":"C809","label":{"ja":"悪性新生物＜腫瘍＞，原発部位詳細不明","en":"Malignant neoplasm, primary site unspecified"}}],"name":{"ja":"悪性ラブドイド腫瘍","en":"Malignant rhabdoid tumor"}},{"terms":[{"code":"C719","label":{"ja":"脳，部位不明","en":"Malignant neoplasm: Brain, unspecified"}}],"name":{"ja":"上衣腫","en":"Myxopapillary ependymoma"}},{"terms":[{"code":"C64","label":{"ja":"腎盂を除く腎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of kidney, except renal pelvis"}}],"name":{"ja":"腎明細胞肉腫","en":"Clear cell sarcoma of the kidney"}},{"terms":[{"code":"C64","label":{"ja":"腎盂を除く腎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of kidney, except renal pelvis"}}],"name":{"ja":"胎児性横紋筋型腎芽腫","en":"Fetal rhabdomyomatous Nephroblastoma"}},{"terms":[{"code":"C966","label":{"ja":"単局性ランゲルハンス＜Langerhans＞細胞組織球症","en":"Unifocal Langerhans-cell histiocytosis"}}],"name":{"ja":"ランゲルハンス細胞組織球症","en":"Langerhans cell histiocytosis"}},{"terms":[{"code":"C499","label":{"ja":"結合組織及び軟部組織，部位不明","en":"Malignant neoplasm: Connective and soft tissue, unspecified"}}],"name":{"ja":"脂肪肉腫","en":"Liposarcoma"}},{"terms":[{"code":"C479","label":{"ja":"末梢神経及び自律神経系，部位不明","en":"Malignant neoplasm: Peripheral nerves and autonomic nervous system, unspecified"}}],"name":{"ja":"悪性末梢神経鞘腫","en":"Malignant peripheral nerve sheath tumor"}},{"terms":[{"code":"C749","label":{"ja":"副腎，部位不明","en":"Malignant neoplasm: Adrenal gland, unspecified"}}],"name":{"ja":"神経芽腫","en":"Neuroblastoma"}},{"terms":[{"code":"C809","label":{"ja":"悪性新生物＜腫瘍＞，原発部位詳細不明","en":"Malignant neoplasm, primary site unspecified"}}],"name":{"ja":"NUT carcinoma","en":"NUT carcinoma"}},{"terms":[{"code":"C863","label":{"ja":"皮下脂肪組織炎様T細胞リンパ腫","en":"Subcutaneous panniculitis-like T-cell lymphoma"}}],"name":{"ja":"皮下脂肪識炎様T細胞リンパ腫","en":"Subcutaneous panniculitis-like T-cell lymphoma"}},{"terms":[{"code":"C499","label":{"ja":"結合組織及び軟部組織，部位不明","en":"Malignant neoplasm: Connective and soft tissue, unspecified"}}],"name":{"ja":"滑膜肉腫","en":"Synovial sarcoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":47,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"child","label":{"ja":"小児","en":"Child"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織から抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-rna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra RNA Library Prep Kit for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":75,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":205623563913,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}