{"id":"JGAD000355","research":"hum0116","url":"https://humandbs.dbcls.jp/dataset/JGAD000355","datePublished":"2020-11-24","dateModified":"2021-03-29","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Target Capture）：AML Cancer Panel\nNGS（Target Capture）：41遺伝子","en":"NGS (Target Capture): AML cancer panel\nNGS (Target Capture): 41 genes"}}],"experiments":[{"label":"Targeted DNA sequencing","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"AML（ICD10：C920）：106症例\n①AML患者の末梢血（白血病細胞）45検体\n②AML患者の骨髄液（白血病細胞）19検体\n③AML患者の検体（末梢血もしくは骨髄液の白血病細胞）もしくはヒト白血病細胞を移植後に白血病を発症した免疫不全マウスの検体（脾臓もしくは骨髄液から分離したヒト白血病細胞）を免疫不全マウスに移植し、白血病を発症したマウスの脾臓（ヒト白血病細胞）6検体\n④AML患者の検体（末梢血もしくは骨髄液の白血病細胞）もしくはヒト白血病細胞を移植後に白血病を発症した免疫不全マウスの検体（脾臓もしくは骨髄液から分離したヒト白血病細胞）を免疫不全マウスに移植し、白血病を発症したマウスの骨髄液（ヒト白血病細胞）36検体","en":"AML (ICD10: C920): 106 cases\n1) peripheral blood: 45 samples\n2) bone marrow aspirate: 19 samples\n3) human leukemia cells from spleen of humanized mice with leukemia derived from immune deficiency mice which were infused with peripheral blood, bone marrow aspirate or samples from patients with AML: 6 samples\n4) human leukemia cells from bone marrow aspirate of humanized mice with leukemia derived from immune deficiency mice which were infused with peripheral blood, bone marrow aspirate or samples from patients with AML: 36 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C920","label":{"ja":"急性骨髄芽球性白血病［AML］","en":"Acute myeloblastic leukaemia [AML]"}}],"name":{"ja":"AML","en":"AML"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":106,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"AML患者の末梢血または骨髄液（白血病細胞）から抽出したDNA\nAML患者の検体（末梢血もしくは骨髄液の白血病細胞）もしくはヒト白血病細胞を移植後に白血病を発症した免疫不全マウスの検体（脾臓もしくは骨髄液から分離したヒト白血病細胞）を免疫不全マウスに移植し、白血病を発症したマウスの脾臓または骨髄液（ヒト白血病細胞）から抽出したDNA","en":"DNAs extracted from peripheral blood and bone marrow aspirate\nDNAs extracted from human leukemia cells from spleen and bone marrow aspirate of humanized mice with leukemia derived from immune deficiency mice which were infused with peripheral blood, bone marrow aspirate or samples from patients with AML"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"bone-marrow","label":{"ja":"骨髄","en":"Bone marrow"}},{"code":"spleen","label":{"ja":"脾臓","en":"Spleen"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-dna-sequencing","label":{"en":"Targeted DNA sequencing"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"41遺伝子（NRAS, KRAS, FLT3, TP53, NPM1, KIT, IDH1, IDH2, SF3B1, U2AF1, TET2, DNMT3A, ASXL1, ASXL2, BCOR, RUNX1, KMT2A(MLL), WT1(WT-1), GATA2, STAG2, RAD21, SMC1A, SMC3, MPL, NF1, PTPN11, CSF3R, CBL, CEBPA, SRSF2, DHX15, ZRSR2, EZH2, SETBP1, KDM6A, ETV6, CUX1, PHF6, MGA, ZBTB7A, PPM1D）の翻訳領域","en":"Coding region of 41 genes (NRAS, KRAS, FLT3, TP53, NPM1, KIT, IDH1, IDH2, SF3B1, U2AF1, TET2, DNMT3A, ASXL1, ASXL2, BCOR, RUNX1, KMT2A(MLL), WT1(WT-1), GATA2, STAG2, RAD21, SMC1A, SMC3, MPL, NF1, PTPN11, CSF3R, CBL, CEBPA, SRSF2, DHX15, ZRSR2, EZH2, SETBP1, KDM6A, ETV6, CUX1, PHF6, MGA, ZBTB7A, PPM1D)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"multiplex-pcr-2nd-pcr","label":{"en":"Multiplex PCR + 2nd PCR"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":151,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":25254909024,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}