{"id":"JGAD000303","research":"hum0217","url":"https://humandbs.dbcls.jp/dataset/JGAD000303","datePublished":"2020-09-28","dateModified":"2021-01-21","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Target Capture）","en":"NGS (Target Capture)"}}],"experiments":[{"label":"Targeted DNA sequencing","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"大腸鋸歯状病変（鋸歯状ポリープ）（ICD10：C18）：50症例","en":"colorectal serrated lesions (ICD10: C18): 50 cases"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C18","label":{"ja":"結腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of colon"}}],"name":{"ja":"大腸鋸歯状病変（鋸歯状ポリープ）","en":"colorectal serrated lesions"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":50,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"大腸鋸歯状病変（鋸歯状ポリープ）から抽出したDNA","en":"DNAs extracted from colorectal serrated lesions"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"colorectum","label":{"ja":"大腸","en":"Colorectum"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-dna-sequencing","label":{"en":"Targeted DNA sequencing"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"ACVR2A, AMER1, APC, ARID1A, ATM, AXIN2,\nBMP4, BRAF, CDKN2A, CHD7, CHD8, CTNNB1,\nDKK1, DKK2, DKK3, DKK4, FBXW7, FZD3,\nFZD10, GNAS, GSK3B, HRAS, KRAS, LRP5,\nMLH1, MSH6, NRAS, PIF1, PIK3CA, PTEN,\nRBL1, RNF43, SMAD4, SOX9, TCF7L2, TELO2,\nTGFBR2, TP53, XAF1","en":"ACVR2A, AMER1, APC, ARID1A, ATM, AXIN2,\nBMP4, BRAF, CDKN2A, CHD7, CHD8, CTNNB1,\nDKK1, DKK2, DKK3, DKK4, FBXW7, FZD3,\nFZD10, GNAS, GSK3B, HRAS, KRAS, LRP5,\nMLH1, MSH6, NRAS, PIF1, PIK3CA, PTEN,\nRBL1, RNF43, SMAD4, SOX9, TCF7L2, TELO2,\nTGFBR2, TP53, XAF1"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ion-ampliseq-library-kit-plus","label":{"en":"Ion AmpliSeq Library Kit Plus"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"thermo-fisher-scientific-ion-torrent","label":{"en":"Thermo Fisher Scientific Ion Torrent"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":120,"unit":"bp","high":null,"suffix":{"ja":" (約)","en":" (Approx.)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":31715978240,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}