{"id":"JGAD000242","research":"hum0157","url":"https://humandbs.dbcls.jp/dataset/JGAD000242","datePublished":"2020-09-28","dateModified":"2020-11-18","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Target Capture）","en":"NGS (Target Capture)"}}],"experiments":[{"label":"Targeted DNA sequencing","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"がん：183症例（腫瘍FFPE検体および正常血液検体のペア）\n肺がん（ICD10：C34）：53症例\n肉腫（ICD10：C40-41）：39症例\n大腸がん（ICD10：C17-20）：24症例\n子宮がん（ICD10：C54）：15症例\n卵巣がん（ICD10：C56）：12症例\n子宮肉腫（ICD10：C54）：8症例\n下咽頭癌がん（ICD10：C13）：4症例\n腺様嚢胞がん（ICD10：C07-08）：4症例\n原発不明がん（ICD10：D48）：5症例\nその他組織型のがん：19症例","en":"cancer: 183 cases\n(tumor tissues [FFPE sample] and normal blood cells)\nlung cancer (ICD10: C34): 53 cases\nsoft tissue sarcoma (ICD10: C40-41): 39 cases\ncolon cancer (ICD10: C17-20): 24 cases\nendometrial cancer (ICD10: C54): 15 cases\novarian cancer (ICD10: C56): 12 cases\nendometrial sarcoma (ICD10: C54): 8 cases\nhypopharyngeal cancer (ICD10: C13): 4 cases\nadenoid cystic carcinoma (ICD10: C07-08): 4 cases\ncancer of unknown primary (ICD10: D48): 5 cases\nother types of cancer: 19 cases"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺がん","en":"lung cancer"}},{"terms":[{"code":"C40","label":{"ja":"（四）肢の骨及び関節軟骨の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bone and articular cartilage of limbs"}},{"code":"C41","label":{"ja":"その他及び部位不明の骨及び関節軟骨の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bone and articular cartilage of other and unspecified sites"}}],"name":{"ja":"肉腫","en":"soft tissue sarcoma"}},{"terms":[{"code":"C17","label":{"ja":"小腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of small intestine"}},{"code":"C18","label":{"ja":"結腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of colon"}},{"code":"C19","label":{"ja":"直腸S状結腸移行部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectosigmoid junction"}},{"code":"C20","label":{"ja":"直腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectum"}}],"name":{"ja":"大腸がん","en":"colon cancer"}},{"terms":[{"code":"C54","label":{"ja":"子宮体部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of corpus uteri"}}],"name":{"ja":"子宮がん","en":"endometrial cancer"}},{"terms":[{"code":"C56","label":{"ja":"卵巣の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of ovary"}}],"name":{"ja":"卵巣がん","en":"ovarian cancer"}},{"terms":[{"code":"C54","label":{"ja":"子宮体部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of corpus uteri"}}],"name":{"ja":"子宮肉腫","en":"endometrial sarcoma"}},{"terms":[{"code":"C13","label":{"ja":"下咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of hypopharynx"}}],"name":{"ja":"下咽頭癌がん","en":"hypopharyngeal cancer"}},{"terms":[{"code":"C07","label":{"ja":"耳下腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of parotid gland"}},{"code":"C08","label":{"ja":"その他及び部位不明の大唾液腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified major salivary glands"}}],"name":{"ja":"腺様嚢胞がん","en":"adenoid cystic carcinoma"}},{"terms":[{"code":"D48","label":{"ja":"その他及び部位不明の性状不詳又は不明の新生物＜腫瘍＞","en":"Neoplasm of uncertain or unknown behaviour of other and unspecified sites"}}],"name":{"ja":"原発不明がん","en":"cancer of unknown primary"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":183,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍FFPE検体から抽出したDNA, RNA、および正常血液から抽出したDNA","en":"DNAs extracted from tumor tissues and peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-dna-sequencing","label":{"en":"Targeted DNA sequencing"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"DNAパネルは464遺伝子\nRNAパネルは449遺伝子\nsupplementary table 1参照\nhttp://todaioncopanel.umin.jp/","en":"DNA panel: 464 genes\nRNA panel: 449 genes\ngenes are listed in supplementary table 1"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"sureselect-custom","label":{"en":"SureSelect Custom"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応（Kapa Biosystems）","en":"Enzymatic fragmentation (Kapa Biosystems)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-nextseq","label":{"en":"Illumina NextSeq"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":151,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":4382974399392,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}