{"id":"JGAD000238","research":"hum0164","url":"https://humandbs.dbcls.jp/dataset/JGAD000238","datePublished":"2020-09-28","dateModified":"2020-11-18","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"住民コホートに参加した9,187名の日焼けに関するGWAS","en":"GWAS for skin tanning ability of 9,187 participants"}}],"experiments":[{"label":"Genotyping by array","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"住民コホートに参加した9,187名","en":"9,187 participants of Tohoku Medical Megabank Organization cohort study"}},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":9187,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"cohort","label":{"ja":"コホート","en":"Cohort"},"type":"vocabulary","terms":[{"code":"tohoku-medical-megabank","label":{"en":"Tohoku Medical Megabank"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から抽出したDNA","en":"DNAs extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"genotyping-by-array","label":{"en":"Genotyping by array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"humanomniexpressexome-beadchip-kit","label":{"en":"HumanOmniExpressExome BeadChip Kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-humanomniexpressexome","label":{"en":"Illumina HumanOmniExpressExome"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"検体：Call rate > 0.98\nSNP：HWE P < 0.0001、MAF < 0.01、Missing rate > 0.05","en":"Sample: Call rate > 0.98\nSNP: HWE P < 0.0001, MAF < 0.01, Missing rate > 0.05"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"GenCall software（GenomeStudio）","en":"GenCall software (GenomeStudio)"}},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":6193994,"unit":null,"high":null,"suffix":{"ja":" SNPs","en":" SNPs"}}]},{"key":"processed-data-type","label":{"ja":"加工データの種類","en":"Processed data type"},"type":"vocabulary","terms":[{"code":"gwas-summary-statistics","label":{"ja":"GWAS 要約統計量","en":"GWAS summary statistics"}}]},{"key":"data-summary","label":{"ja":"データ概要","en":"Data summary"},"type":"text","text":{"ja":"GWAS_summary_statistics_JST_Combined_set.txt.gz：宮城県または岩手県在住の日本人9,187人を対象とした日本人のスキンタイプにおけるGWAS統計情報\nGWAS_summary_statistics_JST_Miyagi.txt.gz：宮城県在住の日本人4,475人を対象とした日本人のスキンタイプにおけるGWAS統計情報\nGWAS_summary_statistics_JST_Iwate.txt.gz：岩手県在住の日本人4,712人を対象とした日本人のスキンタイプにおけるGWAS統計情報","en":"GWAS_summary_statistics_JST_Combined_set.txt.gz: GWAS summary statistics of Japanese Skin Type for 9,187 Japanese individuals in Miyagi and Iwate prefectures\nGWAS_summary_statistics_JST_Miyagi.txt.gz: GWAS summary statistics of Japanese Skin Type for 4,475 Japanese individuals in Miyagi prefecture\nGWAS_summary_statistics_JST_Iwate.txt.gz: GWAS summary statistics of Japanese Skin Type for 4,712 Japanese individuals in Iwate prefecture"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":486098752,"fileFormats":[{"code":"txt","label":{"en":"TXT"}}]}