{"id":"JGAD000219","research":"hum0006","url":"https://humandbs.dbcls.jp/dataset/JGAD000219","datePublished":"2020-09-28","dateModified":"2020-11-18","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"グリオーマ\nNGS（Exome、RNA-seq）、Methylation array","en":"gliomas\nNGS (Exome, RNA-seq), Methylation array"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"オリゴデンドログリオーマ（ICD10：C71）：16症例（27検体）\n小脳グリオーマ（ICD10：C71）：14症例（14検体）\n大脳グリオーマ（ICD10：C71）：8症例（8検体）\nグリオーマ（ICD10：C71）：23症例（31検体）\n初発時のみ：8症例、再発時のみ：7症例、初発時と再発時ペア：8症例\n初発時グレードIVからの再発8検体","en":"oligodendroglioma (ICD10: C71): 16 cases (27 samples)\ndiffuse cerebellar glioma (ICD10: C71): 14 cases (14 samples)\ncerebral glioblastoma (ICD10: C71): 8 cases (8 samples)\nglioma (ICD10: C71): 24 cases (31 samples)\n8 pairs of primary-recurrent gliomas, 8 primary gliomas, and 7 recurrent gliomas\nrecurrent tumors of primary grade IV gliomas; 8 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C71","label":{"ja":"脳の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of brain"}}],"name":{"ja":"オリゴデンドログリオーマ","en":"oligodendroglioma"}},{"terms":[{"code":"C71","label":{"ja":"脳の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of brain"}}],"name":{"ja":"小脳グリオーマ","en":"diffuse cerebellar glioma"}},{"terms":[{"code":"C71","label":{"ja":"脳の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of brain"}}],"name":{"ja":"大脳グリオーマ","en":"cerebral glioblastoma"}},{"terms":[{"code":"C71","label":{"ja":"脳の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of brain"}}],"name":{"ja":"グリオーマ","en":"glioma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":8,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"初発時・再発時の腫瘍組織（または同じ腫瘍の別の部位の腫瘍組織）および末梢血（非腫瘍組織）から抽出したRNA","en":"RNAs extracted from surgical specimen of brain tumors (primary and matched recurrent samples) and paired normal peripheral blood cells."}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"brain","label":{"ja":"脳","en":"Brain"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-stranded-total-rna-library-prep-kit","label":{"en":"TruSeq Stranded Total RNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"アルカリ法","en":"Alkalization"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2000","label":{"en":"Illumina HiSeq 2000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":104091243200,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"bam","label":{"en":"BAM"}}]}