{"id":"JGAD000204","research":"hum0141","url":"https://humandbs.dbcls.jp/dataset/JGAD000204","datePublished":"2020-09-28","dateModified":"2020-11-18","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"頭頸部がん：4症例（15検体）\nHNC1：声門上がん（ICD10：C32.1）\nHNC10：舌根部がん（ICD10：C01）\nHNC14：梨状陥凹がん（ICD10：C12）\nHNC18：下咽頭後部がん（ICD10：C13.2）","en":"Head and neck cancer: 4cases (15 samples)\nHNC1: Malignant neoplasm of supraglottis (ICD10: C32.1)\nHNC10: Malignant neoplasm of base of tongue (ICD10: C01)\nHNC14: Malignant neoplasm of other and ill-defined sites in the lip, oral cavity and pharynx (ICD10: C12)\nHNC18: Malignant neoplasm of posterior wall of hypopharynx (ICD10: C13.2)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C321","label":{"ja":"声門上部","en":"Malignant neoplasm: Supraglottis"}}],"name":{"ja":"声門上がん","en":"Malignant neoplasm of supraglottis"}},{"terms":[{"code":"C01","label":{"ja":"舌根＜基底＞部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of base of tongue"}}],"name":{"ja":"舌根部がん","en":"Malignant neoplasm of base of tongue"}},{"terms":[{"code":"C12","label":{"ja":"梨状陥凹＜洞＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of piriform sinus"}}],"name":{"ja":"梨状陥凹がん","en":"oral cavity and pharynx"}},{"terms":[{"code":"C132","label":{"ja":"下咽頭後壁","en":"Malignant neoplasm: Posterior wall of hypopharynx"}}],"name":{"ja":"下咽頭後部がん","en":"Malignant neoplasm of posterior wall of hypopharynx"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":15,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"頭頚部がん（腫瘍組織）に浸潤したCD4+ T細胞の以下の分画から抽出したRNA\n・Double Positive（DP）：CD25+ CTLA4+ Treg細胞\n・CD25：CD25+ T細胞\n・CTLA4：CTLA4+ T細胞\n・Double Negative（DN）：CD25- CTLA4- T細胞","en":"RNAs extracted from isolated cells using different markers from tumor tissues of head and neck cancer\n- Double Positive (DP): CD25+ CTLA4+ Treg cells\n- CD25: CD25+ T cells\n- CTLA4: CTLA4+ T cells\n- Double Negative (DN): CTLA4- CD25- T cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"cd4-t-cell","label":{"ja":"CD4 陽性 T 細胞","en":"CD4+ T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"kapa-library-preparation-kit","label":{"en":"KAPA Library Preparation Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"KAPA Frag","en":"KAPA Frag"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"thermo-fisher-scientific-ion-s5","label":{"en":"Thermo Fisher Scientific Ion S5"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null,"suffix":{"ja":" (平均)","en":" (Mean)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":75982386512,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}