{"id":"JGAD000133","research":"hum0116","url":"https://humandbs.dbcls.jp/dataset/JGAD000133","datePublished":"2020-11-24","dateModified":"2021-03-09","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Target Capture）：AML Cancer Panel\nNGS（Target Capture）：41遺伝子","en":"NGS (Target Capture): AML cancer panel\nNGS (Target Capture): 41 genes"}}],"experiments":[{"label":"Targeted DNA sequencing","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"AML（ICD10：C920）：19症例\n白血病幹細胞33検体、Pre-白血病幹細胞2検体、T細胞6検体、B細胞2検体（計43検体）\n19症例のうち12症例の白血病幹細胞を輸注した免疫不全マウス（ヒト化マウス）の内、白血病を発症したヒト化マウス37匹から採取したヒト白血病細胞37検体","en":"AML (ICD10: C920): 19 cases\nLeukemia stem cell: 33 samples, Pre-leukemia stem cell: 2 samples, T-cell: 6 samples, B-cell: 2 samples (total 43 samples)\n37 human leukemia stem cell samples from 37 humanized mice with leukemia derived from immune deficiency mice which were infused with human leukemia stem cell from 12 patients with AML"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C920","label":{"ja":"急性骨髄芽球性白血病［AML］","en":"Acute myeloblastic leukaemia [AML]"}}],"name":{"ja":"AML","en":"AML"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":19,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"白血病幹細胞、Pre-白血病幹細胞、T細胞、B細胞から抽出したDNA\n白血病幹細胞を輸注した免疫不全マウス（ヒト化マウス）の内、白血病を発症したヒト化マウスから採取したヒト白血病細胞から抽出したDNA","en":"DNAs extracted from leukemia stem cells, pre-leukemia stem cells, T-cell and B-cells\nDNAs extracted from leukemia stem cells from humanized mice with leukemia derived from immune deficiency mice which were infused with human leukemia stem cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"leukemia-stem-cell","label":{"en":"Leukemia stem cell"}},{"code":"pre-leukemic-stem-cell","label":{"en":"Pre-leukemic stem cell"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}},{"code":"b-cell","label":{"ja":"B 細胞","en":"B cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-dna-sequencing","label":{"en":"Targeted DNA sequencing"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"xGen® Acute Myeloid Leukemia Cancer Panel","en":"xGen® Acute Myeloid Leukemia Cancer Panel"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"kapa-hyper-prep-kit","label":{"en":"KAPA Hyper Prep Kit"}},{"code":"xgen-acute-myeloid-leukemia-cancer-panel","label":{"en":"xGen Acute Myeloid Leukemia Cancer Panel"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-1500","label":{"en":"Illumina HiSeq 1500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":50,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":454374795264,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}