{"id":"JGAD000085","research":"hum0099","url":"https://humandbs.dbcls.jp/dataset/JGAD000085","datePublished":"2020-09-28","dateModified":"2025-10-27","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"RNA-seqによる遺伝子発現量データ（FPKM情報）","en":"RNA-seq\n(Fragments Per Kilobase of exon per Million mapped fragments: FPKM)"}}],"experiments":[{"label":"RNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：105名（男性21名、女性84名）\n5種類の免疫細胞（CD4陽性T細胞、CD8陽性T細胞、B細胞、NK細胞、単球）および全血（計6サンプルずつ）","en":"105 healthy volunteers (21 males, 84 females)\nFive immune cell populations (CD4⁺ T cells, CD8⁺ T cells, B cells, NK cells, and monocytes) and whole blood cells (6 samples each)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":105,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sex","label":{"ja":"性別","en":"Sex"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"5種類の免疫細胞（CD4陽性T細胞、CD8陽性T細胞、B細胞、NK細胞、単球）および全血より抽出したtotal RNA","en":"total RNAs extracted from five immune cell populations (CD4⁺ T cells, CD8⁺ T cells, B cells, NK cells, and monocytes) and whole blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"cd4-t-cell","label":{"ja":"CD4 陽性 T 細胞","en":"CD4+ T cell"}},{"code":"cd8-t-cell","label":{"ja":"CD8 陽性 T 細胞","en":"CD8+ T cell"}},{"code":"b-cell","label":{"ja":"B 細胞","en":"B cell"}},{"code":"nk-cell","label":{"ja":"NK 細胞","en":"NK cell"}},{"code":"monocyte","label":{"ja":"単球","en":"Monocyte"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-stranded-mrna-library-prep-kit","label":{"en":"TruSeq Stranded mRNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"熱変性","en":"heat denaturation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":125,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Tophat2","en":"Tophat2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Total read counts < 2 x 10⁷ 、Mapping rates < 90%、Mean inter-sample correlation coefficients < 0.94","en":"Total read counts < 2 x 10⁷ , Mapping rates < 90%, Mean inter-sample correlation coefficients < 0.94"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cufflinks + Gencode version 19 gene model (in FPKM unit)","en":"Cufflinks + Gencode version 19 gene model (in FPKM unit)"}},{"key":"read-count","label":{"ja":"リード数","en":"Read count"},"type":"text","text":{"ja":"平均 4.52 x 10⁷ / 4.39 x 10⁷","en":"4.52 x 10⁷ / 4.39 x 10⁷ on average"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":56102304,"fileFormats":[{"code":"tar","label":{"en":"TAR"}}]}