{"id":"JGAD000006","research":"hum0009","url":"https://humandbs.dbcls.jp/dataset/JGAD000006","datePublished":"2020-09-28","dateModified":"2020-09-28","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（PBAT-seq）","en":"NGS (PBAT-seq)"}}],"experiments":[{"label":{"ja":"PBAT-seq","en":"PBAT-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"11検体\n正常卵子、精子、受精卵（着床前胚）、臍帯血\n（卵子、着床前胚についてはプールしたDNAを使用）","en":"11 samples\nHuman oocytes, sperm, preimplantation embryos and cord blood cells\n(Each DNAs from oocytes and preimplantation embryos were pooled)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":11,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sex","label":{"ja":"性別","en":"Sex"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"それぞれの組織から抽出したDNAを使用\n卵子（増幅有）※1：79検体をプール\n卵子（増幅無）※1：123検体をプール\n精子：3検体\n受精卵（着床前胚）：80検体をプール\n臍帯血：5検体","en":"DNAs extracted from each cell\nOocytes (amplified)*1: 79 samples were pooled\nOocytes: 123 samples were pooled\nSperm: 3 samples\nPreimplantation embryos: 80 samples were pooled\nCord blood cells: 5 samples"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"oocyte","label":{"en":"Oocyte"}},{"code":"sperm","label":{"en":"Sperm"}},{"code":"embryo","label":{"en":"Embryo"}},{"code":"cord-blood","label":{"ja":"臍帯血","en":"Cord blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"pbat-seq","label":{"en":"PBAT-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"post-bisulfite-adaptor-tagging-pbat","label":{"en":"Post-Bisulfite Adaptor-Tagging (PBAT)"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"バイサルファイト処理","en":"Bisulfite Treatment"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2000","label":{"en":"Illumina HiSeq 2000"}},{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"has-phenotype-data","label":{"ja":"表現型データの有無","en":"Phenotype data"},"type":"vocabulary","terms":[{"code":"not-included","label":{"ja":"なし","en":"Not included"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"no-use-by-private-sector-companies-jgap000003","label":{"ja":"民間企業による利用禁止 (JGAP000003)","en":"No use by private-sector companies (JGAP000003)"}}]}]}],"dataVolume":407304735536,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"tsv","label":{"en":"TSV"}}]}