{"id":"E-GEAD-747","research":"hum0440","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-747","datePublished":"2024-05-15","dateModified":"2024-05-15","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Visium Spatial Gene Expression）、病理画像","en":"NGS (Visium Spatial Gene Expression), Histological image"}}],"experiments":[{"label":"Visium 空間トランスクリプトーム + 病理画像","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"胸腺腫（ICD10：C37）：7症例、内2症例は重症筋無力症（ICD10：G700）を合併\n腫瘍組織：8検体\n（重複1例については、同一組織より2箇所のサンプリングを施行した）\n胸腺過形成（ICD10：E32.0）：2症例、重症筋無力症（ICD10：G700）を合併\n胸腺過形成組織：2検体","en":"Thymoma (ICD10: C37): 7 cases, including 2 cases complicating myasthenia gravis (ICD10: G700)\ntumor tissue: 8 samples\n(For one duplicate thymoma, sampling was performed at two locations from the same tissue.)\nThymic hyperplasia (ICD10: E32.0): 2 cases complicating myasthenia gravis (ICD10: G700)\nthymic hyperplasia: 2 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C37","label":{"ja":"胸腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thymus"}}],"name":{"ja":"胸腺腫","en":"Thymoma"}},{"terms":[{"code":"G700","label":{"ja":"重症筋無力症","en":"Myasthenia gravis"}}],"name":{"ja":"重症筋無力症","en":"myasthenia gravis"}},{"terms":[{"code":"E320","label":{"ja":"胸腺の過形成遺残","en":"Persistent hyperplasia of thymus"}}],"name":{"ja":"胸腺過形成","en":"Thymic hyperplasia"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":9,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織または胸腺過形成組織より抽出したRNA","en":"RNAs extracted from tumor tissues or thymic hyperplasia samples"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"thymus","label":{"ja":"胸腺","en":"Thymus"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}},{"code":"histological-image","label":{"en":"Histological image"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"sample-processing","label":{"ja":"試料の処理","en":"Sample processing"},"type":"text","text":{"ja":"組織染色: HE染色","en":"Histological staining: hematoxylin-eosin staining"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"visium-spatial-gene-expression","label":{"en":"Visium Spatial Gene Expression"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":28,"unit":"bp","high":null,"prefix":{"ja":"R1: ","en":"R1: "}},{"value":100,"unit":"bp","high":null,"prefix":{"ja":"R2: ","en":"R2: "}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Space Ranger v2.0.1","en":"Space Ranger v2.0.1"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":1213214944,"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"tar","label":{"en":"TAR"}}]}