{"id":"E-GEAD-416","research":"hum0257","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-416","datePublished":"2021-12-27","dateModified":"2022-06-10","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（ATAC-seq）","en":"NGS (ATAC-seq)"}}],"experiments":[{"label":"ATAC-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"膵管がん（ICD10：C25.3）：17症例\n- 腫瘍組織由来オルガノイド：20検体\n膵管内乳頭粘液性腫瘍（ICD10：D13.6）：6症例\n- 腫瘍組織由来オルガノイド：4検体、傍腫瘍組織由来オルガノイド：2検体","en":"Pancreatic ductal adenocarcinoma (ICD10: C25.3): 17 cases\n- organoids derived from tumor tissues: 20 samples\nIntraductal papillary mucinous neoplasm (ICD10: D13.6): 6 cases\n- organoids derived from tumor tissues: 4 samples, organoids derived from tumor-adjacent tissues: 2 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C253","label":{"ja":"膵管","en":"Malignant neoplasm: Pancreatic duct"}}],"name":{"ja":"膵管がん","en":"Pancreatic ductal adenocarcinoma"}},{"terms":[{"code":"D136","label":{"ja":"膵","en":"Benign neoplasm: Pancreas"}}],"name":{"ja":"膵管内乳頭粘液性腫瘍","en":"Intraductal papillary mucinous neoplasm"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":23,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"膵腫瘍組織から樹立したオルガノイドより抽出したDNA","en":"DNAs extracted from organoids established from pancreatic tumors"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"organoid","label":{"ja":"オルガノイド","en":"Organoid"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"atac-seq","label":{"en":"ATAC-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"illumina-tagment-dna-tde1-enzyme-and-buffer-kits","label":{"en":"Illumina Tagment DNA TDE1 Enzyme and Buffer Kits"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-nextseq-500","label":{"en":"Illumina NextSeq 500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":50,"unit":"bp","high":null,"prefix":{"ja":"read1: ","en":"read1: "}},{"value":25,"unit":"bp","high":null,"prefix":{"ja":"read2: ","en":"read2: "}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":13071472464,"fileFormats":[{"code":"bed","label":{"en":"BED"}},{"code":"narrowpeak","label":{"en":"narrowPeak"}},{"code":"bigwig","label":{"en":"bigWig"}},{"code":"txt","label":{"en":"TXT"}}]}