{"id":"DRA021372","research":"hum0416","url":"https://humandbs.dbcls.jp/dataset/DRA021372","datePublished":"2025-05-31","dateModified":"2025-05-30","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq）","en":"NGS (scRNA-seq)"}}],"experiments":[{"label":"scRNA-seq","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"ベーチェット症候群（ICD10：M35.2）：11症例\n血液（10x chromium）：10症例10検体\n血液（BD Rhapsody）：4症例4検体（10x chromiumと重複）\n脳脊髄液（BD Rhapsody）：3症例3検体（内、2症例は10x chromiumと重複）","en":"Behçet's Syndrome (ICD10: M35.2): 11 cases\nblood (10x chromium): 10 cases 10 samples\nblood (BD Rhapsody): 4 cases 4 samples (also used in 10x chromium)\ncerebrospinal fluid (CSF) (BD Rhapsody): 3 cases 3 samples (2 cases are also used in 10x chromium)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"M352","label":{"ja":"ベーチェット＜Behcet＞病","en":"Behçet disease"}}],"name":{"ja":"ベーチェット症候群","en":"Behçet's Syndrome"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":11,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"血液または脳脊髄液より分離した単細胞から抽出したmRNA","en":"RNAs extracted from a single cell isolated from blood and CSF samples"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"cerebrospinal-fluid","label":{"ja":"脳脊髄液","en":"Cerebrospinal fluid"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}},{"code":"bd-rhapsody-wta-reagent-kit","label":{"en":"BD Rhapsody WTA Reagent Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic Fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":91,"unit":"bp","high":null,"prefix":{"ja":"10x chromium: ","en":"10x chromium: "}},{"value":150,"unit":"bp","high":null,"prefix":{"ja":"BD Rhapsody: ","en":"BD Rhapsody: "}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"10x chromium：Cell Ranger Matrics\nBD Rhapsody：BD Rhapsody Sequence Analysis Pipeline basic algorithm for putative cell identification","en":"10x chromium: Cell Ranger Matrics\nBD Rhapsody: BD Rhapsody Sequence Analysis Pipeline basic algorithm for putative cell identification"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"10x chromium：CellRanger （version 6.0.6）\nBD Rhapsody：BD Rhapsody Sequence Analysis Pipeline （version 1.12）","en":"10x chromium: CellRanger (version 6.0.6)\nBD Rhapsody: BD Rhapsody Sequence Analysis Pipeline (version 1.12)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":723858348454,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}