{"id":"DRA008482","research":"hum0182","url":"https://humandbs.dbcls.jp/dataset/DRA008482","datePublished":"2019-06-21","dateModified":"2019-05-31","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS）：NA18943","en":"NGS (WGS): NA18943"}}],"experiments":[{"label":"WGS","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"① RK067（ICGC日本人肝臓がん症例の正常細胞）\n② NA18943（HapMap検体）\n④RK014、RK019、RK020、RK085、RK0143、RK147、RK156、RK157、RK167、RK281（ICGC日本人肝臓がん症例の正常細胞）\nRK014、RK019、RK020、RK067、RK085、RK0143、RK147、RK156、RK157、RK167、RK281（ICGC日本人肝臓がん症例の腫瘍組織）","en":"1) RK067 (a liver cancer patient): 1 case\n2) NA18943 (HapMap): 1 sample\n4) RK014, RK019, RK020, RK067, RK085, RK0143, RK147, RK156, RK157, RK167, RK281 (liver cancer patients): 11 cases"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"cohort","label":{"ja":"コホート","en":"Cohort"},"type":"vocabulary","terms":[{"code":"hapmap","label":{"en":"HapMap"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"① 肝臓がん患者の末梢血（正常組織）から抽出したDNA\n② HapMap DNA検体\n④ 肝臓がん患者の末梢血（正常組織）および腫瘍組織から抽出したDNA","en":"1) DNA extracted from blood sample (normal cell) of a liver cancer patient\n2) HapMap DNA sample\n4) RK014, RK019, RK020, RK085, RK0143, RK147, RK156, RK157, RK167, RK281: DNA extracted from blood samples (normal cell) of liver cancer patients\nRK014, RK019, RK020, RK067, RK085, RK0143, RK147, RK156, RK157, RK167, RK281: DNA extracted from tumor tissues of liver cancer patients"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"cell-line","label":{"ja":"細胞株","en":"Cell line"},"type":"vocabulary","terms":[{"code":"na18943","label":{"en":"NA18943"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":"https://www.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=NA18943&Product=DNA","en":"https://www.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=NA18943&Product=DNA"}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ligation-sequencing-kit-sqk-lsk108","label":{"en":"Ligation Sequencing Kit (SQK-LSK108)"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"g-TUBE（Covaris）","en":"g-TUBE (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"oxford-nanopore-technologies-minion","label":{"en":"Oxford Nanopore Technologies MinION"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":7463,"unit":"bp","high":null,"suffix":{"ja":" (①④)","en":" (①④)"}},{"value":3479,"unit":"bp","high":null,"suffix":{"ja":" (②)","en":" (②)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":68217937266,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}