{"id":"DRA007336","research":"hum0122","url":"https://humandbs.dbcls.jp/dataset/DRA007336","datePublished":"2019-11-14","dateModified":"2019-11-14","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS）","en":"NGS (WGS)"}}],"experiments":[{"label":"WGS","values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"ヒト臍帯血由来単核細胞（タカラバイオD10118）：4検体（CB_1, CB_2-1, CB_2-2, CB_2-3）\n- CB_1から誘導したiPS細胞：5検体\n- CB_2-1から誘導したiPS細胞：3検体\n- CB_2-2から誘導したiPS細胞：3検体\n- CB_2-3から誘導したiPS細胞：3検体\n成人皮膚線維芽細胞（クラボウKF4109）：1検体（adult human dermal fibroblast [HDFa]）\n- HDFaから誘導したiPS細胞：8検体","en":"Mononuclear Cells from Cord Blood (Takara D10118): 4 sample (CB_1, CB_2-1, CB_2-2, and CB_2-3)\n- iPS cells derived from CB_1: 5 samples\n- iPS cells derived from CB_2-1: 3 samples\n- iPS cells derived from CB_2-2: 3 samples\n- iPS cells derived from CB_2-3: 3 samples\nHuman Dermal Fibroblast (KURABO KF4109): 1 sample (adult human dermal fibroblast [HDFa])\n- iPS cells derived from HDFa: 8 samples"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":27,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"adult","label":{"ja":"成人","en":"Adult"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"樹立したiPS細胞、および樹立に用いた購入細胞それぞれから抽出したDNA","en":"DNAs extracted from iPS cells and their parental cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"cord-blood","label":{"ja":"臍帯血","en":"Cord blood"}},{"code":"cord-blood-mononuclear-cell","label":{"en":"Cord blood mononuclear cell"}},{"code":"dermal-fibroblast","label":{"en":"Dermal fibroblast"}},{"code":"ipsc","label":{"ja":"iPS 細胞","en":"iPSC"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"cell-line","label":{"ja":"細胞株","en":"Cell line"},"type":"vocabulary","terms":[{"code":"cord-blood-mononuclear-cell-takara-d10118","label":{"en":"Cord blood mononuclear cell (TaKaRa D10118)"}},{"code":"hdfa-kurabo-kf4109","label":{"en":"HDFa (KURABO KF4109)"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":"タカラバイオ（D10118）：\nhttp://catalog.takara-bio.co.jp/product/basic_info.php?unitid=U100007076\nクラボウ（KF4109）：\nhttps://www.kurabo.co.jp/bio/product/products.php?M=L&A=C&PPID=118","en":"TaKaRa Bio (D10118):\nhttp://catalog.takara-bio.co.jp/product/basic_info.php?unitid=U100007076\nKURABO (KF4109):\nhttps://www.kurabo.co.jp/bio/product/products.php?M=L&A=C&PPID=118"}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-dna-pcr-free-library-prep-kit","label":{"en":"TruSeq DNA PCR-Free Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-x","label":{"en":"Illumina HiSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":400,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":604803565406,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]}