{"total":999,"page":1,"pageCount":50,"query":"","hits":[{"id":"JGAD001060","research":"hum0335","url":"https://humandbs.dbcls.jp/dataset/JGAD001060","datePublished":"2026-10-08","dateModified":"2026-10-08","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Exome）","en":"NGS (Exome)"}}],"experiments":[{"label":{"ja":"Exome","en":"Exome"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"リンパ増殖性疾患（ICD10：C917）：1症例\n骨髄細胞：1検体","en":"T cell lymphoproliferative disease (ICD10: C917): 1 case\nbone marrow cells: 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C917","label":{"ja":"その他のリンパ性白血病","en":"Other lymphoid leukaemia"}}],"name":{"ja":"リンパ増殖性疾患","en":"T cell lymphoproliferative disease"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"骨髄細胞から抽出したDNA","en":"DNAs extracted from bone marrow cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"bone-marrow","label":{"ja":"骨髄","en":"Bone marrow"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"sureselect-human-all-exon-v6","label":{"en":"SureSelect Human All Exon V6"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":null},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":11034425349,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"E-GEAD-1053","research":"hum0290","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1053","datePublished":"2025-05-19","dateModified":"2026-10-02","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scATAC-seq）","en":"NGS (scRNA-seq, scATAC-seq)"}}],"experiments":[{"label":{"ja":"scRNA-seq + scATAC-seq","en":"scRNA-seq + scATAC-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：94名（125検体）","en":"94 healthy volunteers (125 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":94,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血より単離した細胞から抽出したDNAおよびRNA","en":"DNAs/RNAs extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}},{"code":"scatac-seq","label":{"en":"scATAC-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-multiome-atac-gene-expression","label":{"en":"Chromium Next GEM Single Cell Multiome ATAC + Gene Expression"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}},{"code":"illumina-novaseq-x","label":{"en":"Illumina NovaSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":118,"unit":"bp","high":null,"prefix":{"ja":"scRNA-seq: ","en":"scRNA-seq: "}},{"value":99,"unit":"bp","high":null,"prefix":{"ja":"scATAC-seq: ","en":"scATAC-seq: "}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"CellRanger-arc（ver2.0.0）","en":"CellRanger-arc (ver2.0.0)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":346755506422,"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"tar","label":{"en":"TAR"}}]},{"id":"E-GEAD-1058","research":"hum0290","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1058","datePublished":"2025-05-19","dateModified":"2026-10-02","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"CyTOF","en":"CyTOF"}}],"experiments":[{"label":{"ja":"Mass cytometry (CyTOF)","en":"Mass cytometry (CyTOF)"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：43名（43検体）","en":"43 healthy volunteers (43 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":43,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から単離した細胞","en":"peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cytof","label":{"en":"CyTOF"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"免疫応答に関する30蛋白質","en":"30 proteins related to immune response"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"maxpar-direct-immune-profiling-assay","label":{"en":"Maxpar Direct Immune Profiling Assay"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"fluidigm-helios","label":{"en":"Fluidigm Helios"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Maxpar Pathsetter （Cat. #401018）","en":"Maxpar Pathsetter (Cat. #401018)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":3433906802,"fileFormats":[{"code":"txt","label":{"en":"TXT"}}]},{"id":"JGAD001104","research":"hum0607","url":"https://humandbs.dbcls.jp/dataset/JGAD001104","datePublished":"2026-10-01","dateModified":"2026-10-01","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Target Capture）","en":"NGS (Target Capture)"}}],"experiments":[{"label":{"ja":"Targeted DNA sequencing","en":"Targeted DNA sequencing"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"ALK遺伝子異常を有する希少がん（ICD10：C00-C80）：24症例\n血漿中cfDNA：24検体\nバフィーコートより抽出したDNA：19検体","en":"Rare Cancers Harboring ALK Alterations (ICD10: C00-C80): 24 cases\ncfDNA in plasma samples: 24 samples\ngDNA extracted from buffy coats: 19 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C00","label":{"ja":"口唇の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of lip"}},{"code":"C01","label":{"ja":"舌根＜基底＞部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of base of tongue"}},{"code":"C02","label":{"ja":"舌のその他及び部位不明の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified parts of tongue"}},{"code":"C03","label":{"ja":"歯肉の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of gum"}},{"code":"C04","label":{"ja":"口（腔）底の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of floor of mouth"}},{"code":"C05","label":{"ja":"口蓋の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of palate"}},{"code":"C06","label":{"ja":"その他及び部位不明の口腔の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified parts of mouth"}},{"code":"C07","label":{"ja":"耳下腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of parotid gland"}},{"code":"C08","label":{"ja":"その他及び部位不明の大唾液腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified major salivary glands"}},{"code":"C09","label":{"ja":"扁桃の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of tonsil"}},{"code":"C10","label":{"ja":"中咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of oropharynx"}},{"code":"C11","label":{"ja":"鼻＜上＞咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of nasopharynx"}},{"code":"C12","label":{"ja":"梨状陥凹＜洞＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of piriform sinus"}},{"code":"C13","label":{"ja":"下咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of hypopharynx"}},{"code":"C14","label":{"ja":"その他及び部位不明確の口唇，口腔及び咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and ill-defined sites in the lip, oral cavity and pharynx"}},{"code":"C15","label":{"ja":"食道の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of oesophagus"}},{"code":"C16","label":{"ja":"胃の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of stomach"}},{"code":"C17","label":{"ja":"小腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of small intestine"}},{"code":"C18","label":{"ja":"結腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of colon"}},{"code":"C19","label":{"ja":"直腸S状結腸移行部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectosigmoid junction"}},{"code":"C20","label":{"ja":"直腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectum"}},{"code":"C21","label":{"ja":"肛門及び肛門管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of anus and anal canal"}},{"code":"C22","label":{"ja":"肝及び肝内胆管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of liver and intrahepatic bile ducts"}},{"code":"C23","label":{"ja":"胆のう＜嚢＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of gallbladder"}},{"code":"C24","label":{"ja":"その他及び部位不明の胆道の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified parts of biliary tract"}},{"code":"C25","label":{"ja":"膵の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of pancreas"}},{"code":"C26","label":{"ja":"その他及び部位不明確の消化器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and ill-defined digestive organs"}},{"code":"C30","label":{"ja":"鼻腔及び中耳の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of nasal cavity and middle ear"}},{"code":"C31","label":{"ja":"副鼻腔の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of accessory sinuses"}},{"code":"C32","label":{"ja":"喉頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of larynx"}},{"code":"C33","label":{"ja":"気管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of trachea"}},{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}},{"code":"C37","label":{"ja":"胸腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thymus"}},{"code":"C38","label":{"ja":"心臓，縦隔及び胸膜の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of heart, mediastinum and pleura"}},{"code":"C39","label":{"ja":"その他及び部位不明確の呼吸器系及び胸腔内臓器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and ill-defined sites in the respiratory system and intrathoracic organs"}},{"code":"C40","label":{"ja":"（四）肢の骨及び関節軟骨の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bone and articular cartilage of limbs"}},{"code":"C41","label":{"ja":"その他及び部位不明の骨及び関節軟骨の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bone and articular cartilage of other and unspecified sites"}},{"code":"C43","label":{"ja":"皮膚の悪性黒色腫","en":"Malignant melanoma of skin"}},{"code":"C44","label":{"ja":"皮膚のその他の悪性新生物＜腫瘍＞","en":"Other malignant neoplasms of skin"}},{"code":"C45","label":{"ja":"中皮腫","en":"Mesothelioma"}},{"code":"C46","label":{"ja":"カポジ＜Kaposi＞肉腫","en":"Kaposi sarcoma"}},{"code":"C47","label":{"ja":"末梢神経及び自律神経系の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of peripheral nerves and autonomic nervous system"}},{"code":"C48","label":{"ja":"後腹膜及び腹膜の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of retroperitoneum and peritoneum"}},{"code":"C49","label":{"ja":"その他の結合組織及び軟部組織の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other connective and soft tissue"}},{"code":"C50","label":{"ja":"乳房の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of breast"}},{"code":"C51","label":{"ja":"外陰（部）の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of vulva"}},{"code":"C52","label":{"ja":"腟の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of vagina"}},{"code":"C53","label":{"ja":"子宮頚部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of cervix uteri"}},{"code":"C54","label":{"ja":"子宮体部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of corpus uteri"}},{"code":"C55","label":{"ja":"子宮の悪性新生物＜腫瘍＞，部位不明","en":"Malignant neoplasm of uterus, part unspecified"}},{"code":"C56","label":{"ja":"卵巣の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of ovary"}},{"code":"C57","label":{"ja":"その他及び部位不明の女性生殖器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified female genital organs"}},{"code":"C58","label":{"ja":"胎盤の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of placenta"}},{"code":"C60","label":{"ja":"陰茎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of penis"}},{"code":"C61","label":{"ja":"前立腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of prostate"}},{"code":"C62","label":{"ja":"精巣＜睾丸＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of testis"}},{"code":"C63","label":{"ja":"その他及び部位不明の男性生殖器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified male genital organs"}},{"code":"C64","label":{"ja":"腎盂を除く腎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of kidney, except renal pelvis"}},{"code":"C65","label":{"ja":"腎盂の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of renal pelvis"}},{"code":"C66","label":{"ja":"尿管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of ureter"}},{"code":"C67","label":{"ja":"膀胱の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bladder"}},{"code":"C68","label":{"ja":"その他及び部位不明の尿路の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified urinary organs"}},{"code":"C69","label":{"ja":"眼及び付属器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of eye and adnexa"}},{"code":"C70","label":{"ja":"髄膜の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of meninges"}},{"code":"C71","label":{"ja":"脳の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of brain"}},{"code":"C72","label":{"ja":"脊髄，脳神経及びその他の中枢神経系の部位の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of spinal cord, cranial nerves and other parts of central nervous system"}},{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}},{"code":"C74","label":{"ja":"副腎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of adrenal gland"}},{"code":"C75","label":{"ja":"その他の内分泌腺及び関連組織の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other endocrine glands and related structures"}},{"code":"C76","label":{"ja":"その他及び部位不明確の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and ill-defined sites"}},{"code":"C77","label":{"ja":"リンパ節の続発性及び部位不明の悪性新生物＜腫瘍＞","en":"Secondary and unspecified malignant neoplasm of lymph nodes"}},{"code":"C78","label":{"ja":"呼吸器及び消化器の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of respiratory and digestive organs"}},{"code":"C79","label":{"ja":"その他の部位及び部位不明の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of other and unspecified sites"}},{"code":"C80","label":{"ja":"悪性新生物＜腫瘍＞，部位が明示されていないもの","en":"Malignant neoplasm, without specification of site"}}],"name":{"ja":"ALK遺伝子異常を有する希少がん","en":"Rare Cancers Harboring ALK Alterations"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":24,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"血漿中cfDNAおよびgDNA","en":"cfDNA in plasma samples or gDNA in buffy coats"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"buffy-coat","label":{"ja":"バフィーコート","en":"buffy coat"}},{"code":"plasma","label":{"ja":"血漿","en":"Plasma"}},{"code":"cfdna","label":{"en":"cfDNA"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-dna-sequencing","label":{"en":"Targeted DNA sequencing"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"737遺伝子（Todai OncoPanel version 6）","en":"737 genes (Todai OncoPanel version 6)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"twist-library-preparation-ef-kit","label":{"en":"Twist Library Preparation EF Kit"}},{"code":"twist-umi-adapter-system","label":{"en":"Twist UMI Adapter System"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":139.9,"unit":"bp","high":null,"suffix":{"ja":" (平均)","en":" (Mean)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"bwa mem","en":"bwa mem"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"平均 32.2","en":"32.2 on average"}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":1616.9,"unit":"x","high":null,"suffix":{"ja":" (平均)","en":" (Mean)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":573709681062,"fileFormats":[{"code":"bam","label":{"en":"BAM"}}]},{"id":"JGAD001048","research":"hum0567","url":"https://humandbs.dbcls.jp/dataset/JGAD001048","datePublished":"2026-09-24","dateModified":"2026-09-24","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS、RNA-seq）","en":"NGS (WGS, RNA-seq)"}}],"experiments":[{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"稀な肝希少疾患、特にFALDを背景に発症した肝がん（ICD10：C220）：13 症例\n腫瘍組織：13検体\n非腫瘍肝組織：13検体","en":"liver cancer caused by rare liver diseases, especially FALD (ICD10: C220): 13 cases\ntumor tissue: 13 samples\nnon-tumor tissue: 13 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C220","label":{"ja":"肝細胞癌","en":"Malignant neoplasm: Liver cell carcinoma"}}],"name":{"ja":"稀な肝希少疾患、特にFALDを背景に発症した肝がん","en":"liver cancer caused by rare liver diseases, especially FALD"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":13,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から抽出したDNA","en":"DNAs extracted from tumor and non-tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"liver","label":{"ja":"肝臓","en":"Liver"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-dna-pcr-free-library-prep-kit","label":{"en":"TruSeq DNA PCR-Free Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化（Covaris）","en":"Ultrasonic fragmentation (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}},{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"BWA-MEM","en":"BWA-MEM"}},{"key":"read-deduplication","label":{"ja":"リード重複除去","en":"Read deduplication"},"type":"text","text":{"ja":"Picard MarkDuplicates (Duplication rate: approx. 15%)","en":"Picard MarkDuplicates (Duplication rate: approx. 15%)"}},{"key":"calibration-for-re-alignment-and-base-quality","label":{"ja":"再アライメント・塩基品質補正","en":"Realignment and base quality recalibration"},"type":"text","text":{"ja":"GATK BQSR","en":"GATK BQSR"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"MAPQ >= 20","en":"MAPQ >= 20"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"・MarkIlluminaAdapters および SamToFastq を用いて、クリッピングパラメータを設定し、アダプターをトリミング\n・MergeBamAlignment (-CLIP_OVERLAPPING_READS true) により重複リードをクリッピング\n・GATK MarkDuplicatesを用いて重複リードをフィルタリング\n・dbSNPおよび既知のindelリソースに基づく塩基品質スコアの再校正（BQSR）\n・GATK FilterMutectCallsのデフォルトパイプラインを用いてアーティファクトおよびコンタミネーションをフィルタリング\n・Funcotatorにより機能アノテーション中のフィルタリング済みバリアントを除去\n*パイプラインの詳細な設定およびパラメータについては、DOI: 10.1097/HEP.0000000000001693のSupplementary Methodsを参照","en":"- Adapter trimming via MarkIlluminaAdapters and SamToFastq with clipping parameters.\n- Overlapping read clipping performed by MergeBamAlignment (-CLIP_OVERLAPPING_READS true).\n- Duplicate read filtering using GATK MarkDuplicates.\n- Base quality score recalibration (BQSR) against dbSNP and known indel resources.\n- Artifact and contamination filtering using GATK FilterMutectCalls default pipeline.\n- Filtered variant removal during functional annotation via Funcotator.\ncf. Supplementary Methods of DOI: 10.1097/HEP.0000000000001693 for detailed pipeline configurations and parameters"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"GATK Mutect2 (v4.6.2.0) + Funcotator\nNextflow oncoanalyser (v2.1.0) / PURPLE\nNextflow oncoanalyser (v2.1.0) + R (StructuralVariantAnnotation / VariantAnnotation)","en":"GATK Mutect2 (v4.6.2.0) + Funcotator\nNextflow oncoanalyser (v2.1.0) / PURPLE\nNextflow oncoanalyser (v2.1.0) + R (StructuralVariantAnnotation / VariantAnnotation)"}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":100,"unit":"x","high":null}]},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":1010,"unit":null,"high":null,"suffix":{"ja":" Indels (中央値)","en":" Indels (Median)"}},{"value":189,"unit":null,"high":2786,"suffix":{"ja":" Indels (範囲)","en":" Indels (Range)"}},{"value":64,"unit":null,"high":null,"suffix":{"ja":" SVs (中央値)","en":" SVs (Median)"}},{"value":2,"unit":null,"high":160,"suffix":{"ja":" SVs (範囲)","en":" SVs (Range)"}},{"value":5373,"unit":null,"high":null,"suffix":{"ja":" SNVs (中央値)","en":" SNVs (Median)"}},{"value":2000,"unit":null,"high":12634,"suffix":{"ja":" SNVs (範囲)","en":" SNVs (Range)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"稀な肝希少疾患、特にFALDを背景に発症した肝がん（ICD10：C220）：13 症例\n腫瘍組織：13検体\n非腫瘍肝組織：13検体","en":"liver cancer caused by rare liver diseases, especially FALD (ICD10: C220): 13 cases\ntumor tissue: 13 samples\nnon-tumor tissue: 13 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C220","label":{"ja":"肝細胞癌","en":"Malignant neoplasm: Liver cell carcinoma"}}],"name":{"ja":"稀な肝希少疾患、特にFALDを背景に発症した肝がん","en":"liver cancer caused by rare liver diseases, especially FALD"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":13,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から抽出したRNA","en":"RNAs extracted from tumor and non-tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"liver","label":{"ja":"肝臓","en":"Liver"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-ii-directional-rna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra II Directional RNA Library Prep Kit for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"化学的断片化（二価カチオン、熱処理）","en":"Chemical fragmentation [divalent cations, heat treatment]"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}},{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"STAR (v2.7.10a)","en":"STAR (v2.7.10a)"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":">91%","en":">91%"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"None (RSEM internally handles multi-mapping reads using EM algorithm)","en":"None (RSEM internally handles multi-mapping reads using EM algorithm)"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"STAR (v2.7.10a) + RSEM (v1.3.3)","en":"STAR (v2.7.10a) + RSEM (v1.3.3)"}},{"key":"gene-number","label":{"ja":"遺伝子数","en":"Gene count"},"type":"number","numbers":[{"value":61552,"unit":null,"high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":4643846600967,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"maf","label":{"en":"MAF"}},{"code":"csv","label":{"en":"CSV"}}]},{"id":"JGAD001086","research":"hum0600","url":"https://humandbs.dbcls.jp/dataset/JGAD001086","datePublished":"2026-09-18","dateModified":"2026-09-18","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq）","en":"NGS (scRNA-seq)"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"甲状腺未分化がん（ICD10：C73）：3症例\n腫瘍組織：3検体\n甲状腺乳頭がん（ICD10：C73）：3症例\n腫瘍組織：3検体","en":"undifferentiated thyroid carcinoma (ICD10: C73): 3 cases\ntumor tissue: 3 samples\npapillary thyroid carcinoma (ICD10: C73): 3 cases\ntumor tissue: 3 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}}],"name":{"ja":"甲状腺未分化がん","en":"undifferentiated thyroid carcinoma"}},{"terms":[{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}}],"name":{"ja":"甲状腺乳頭がん","en":"papillary thyroid carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織より単離した細胞から抽出したRNA","en":"RNA extracted from a single cell isolated from tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-3-v3-1","label":{"en":"Chromium Next GEM Single Cell 3' v3.1"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-x","label":{"en":"Illumina HiSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":90,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":259466566878,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"E-GEAD-1108","research":"hum0511","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1108","datePublished":"2026-07-03","dateModified":"2026-09-11","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scTCR-seq、scCITE-seq）","en":"NGS (scRNA-seq, scTCR-seq, scCITE-seq) processed data"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者6名 (JGAD000957/データセット2)\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"6 healthy individuals (JGAD000957/Dataset 2)\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":72,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":91,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"scTCR-seq","en":"scTCR-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者6名 (JGAD000957/データセット2)\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"6 healthy individuals (JGAD000957/Dataset 2)\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"tcr-seq","label":{"en":"TCR-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-v-d-j-enrichment-kit-human-t-cell","label":{"en":"Chromium Single Cell V(D)J Enrichment Kit, Human T Cell"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":72,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":91,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"scCITE-seq","en":"scCITE-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者6名 (JGAD000957/データセット2)\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"6 healthy individuals (JGAD000957/Dataset 2)\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cite-seq","label":{"en":"CITE-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"CD3、CD4、CD8、CD25、CD27、CD28、CD45RA、CD45RO、CD95、TCRD、CCR7、IL7RA、PD-1、CD161、KLRG1、CD56","en":"CD3, CD4, CD8, CD25, CD27, CD28, CD45RA, CD45RO, CD95, TCRD, CCR7, IL7RA, PD-1, CD161, KLRG1, CD56"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-5-feature-barcode-library-kit","label":{"en":"Chromium Single Cell 5' Feature Barcode Library Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":0,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":15,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":null},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]}],"dataVolume":83780027,"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"tar","label":{"en":"TAR"}}]},{"id":"JGAD000937","research":"hum0513","url":"https://humandbs.dbcls.jp/dataset/JGAD000937","datePublished":"2026-09-08","dateModified":"2026-09-08","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scTCR-seq）","en":"NGS (scRNA-seq, scTCR-seq)"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"COVID-19ワクチン接種者（健常人）：14名\nワクチン3回目接種1年後の末梢血単核球（PBMC）: 14検体","en":"healthy donors, day 365 after the booster, 3rd vaccination: 14 individuals\nperipheral blood mononuclear cells (PBMC): 14 samples"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":14,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PBMCから抽出したRNA","en":"RNA extracted from PBMC"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"pbmc","label":{"ja":"末梢血単核球 (PBMC)","en":"PBMC"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"STAR","en":"STAR"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":null,"en":null}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 7.1.0","en":"Cell Ranger 7.1.0"}},{"key":"gene-number","label":{"ja":"遺伝子数","en":"Gene count"},"type":"number","numbers":[{"value":25170,"unit":null,"high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"scTCR-seq","en":"scTCR-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"COVID-19ワクチン接種者（健常人）：14名\nワクチン3回目接種1年後の末梢血単核球（PBMC）: 14検体","en":"healthy donors, day 365 after the booster, 3rd vaccination: 14 individuals\nperipheral blood mononuclear cells (PBMC): 14 samples"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":14,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PBMCから抽出したRNA","en":"RNA extracted from PBMC"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"pbmc","label":{"ja":"末梢血単核球 (PBMC)","en":"PBMC"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"tcr-seq","label":{"en":"TCR-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-human-tcr-amplification-kit","label":{"en":"Chromium Single Cell Human TCR Amplification Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"STAR","en":"STAR"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":null,"en":null}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 7.1.0","en":"Cell Ranger 7.1.0"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":93557401137,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"bam","label":{"en":"BAM"}},{"code":"bai","label":{"en":"BAI"}},{"code":"csv","label":{"en":"CSV"}},{"code":"json","label":{"en":"JSON"}},{"code":"hdf5","label":{"en":"HDF5"}}]},{"id":"JGAD000957","research":"hum0511","url":"https://humandbs.dbcls.jp/dataset/JGAD000957","datePublished":"2026-08-03","dateModified":"2026-09-08","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS\n(scRNA-seq、scTCR-seq、scCITE-seq、bulk RNA-seq)","en":"NGS\n(scRNA-seq, scTCR-seq, scCITE-seq, bulk RNA-seq)"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"データセット1: 健常者28名\n70～90歳代: 8名\n100歳代: 10名\n110歳代: 10名\nデータセット2: データセット1に含まれる健常者6名\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"Dataset 1: 28 healthy individuals\n70s-90s: 8\n100s: 10\n110s: 10\nDataset 2: 6 healthy individuals included in Dataset 1\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":28,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"データセット1：末梢血T細胞から抽出したRNA\nデータセット2：PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"Dataset 1: RNAs extracted from peripheral blood T cells\nDataset 2: RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":72,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":91,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"scTCR-seq","en":"scTCR-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"データセット1: 健常者28名\n70～90歳代: 8名\n100歳代: 10名\n110歳代: 10名\nデータセット2: データセット1に含まれる健常者6名\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"Dataset 1: 28 healthy individuals\n70s-90s: 8\n100s: 10\n110s: 10\nDataset 2: 6 healthy individuals included in Dataset 1\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":28,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"データセット1：末梢血T細胞から抽出したRNA\nデータセット2：PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"Dataset 1: RNAs extracted from peripheral blood T cells\nDataset 2: RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"tcr-seq","label":{"en":"TCR-seq"}}]},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-v-d-j-enrichment-kit-human-t-cell","label":{"en":"Chromium Single Cell V(D)J Enrichment Kit, Human T Cell"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":72,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":91,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"scCITE-seq","en":"scCITE-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"データセット1: 健常者28名\n70～90歳代: 8名\n100歳代: 10名\n110歳代: 10名\nデータセット2: データセット1に含まれる健常者6名\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"Dataset 1: 28 healthy individuals\n70s-90s: 8\n100s: 10\n110s: 10\nDataset 2: 6 healthy individuals included in Dataset 1\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":28,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"データセット1：末梢血T細胞から抽出したRNA\nデータセット2：PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"Dataset 1: RNAs extracted from peripheral blood T cells\nDataset 2: RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cite-seq","label":{"en":"CITE-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"CD3、CD4、CD8、CD25、CD27、CD28、CD45RA、CD45RO、CD95、TCRD、CCR7、IL7RA、PD-1、CD161、KLRG1、CD56","en":"CD3, CD4, CD8, CD25, CD27, CD28, CD45RA, CD45RO, CD95, TCRD, CCR7, IL7RA, PD-1, CD161, KLRG1, CD56"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-5-feature-barcode-library-kit","label":{"en":"Chromium Single Cell 5' Feature Barcode Library Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":0,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":15,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":null},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"bulk RNA-seq","en":"bulk RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"データセット1に含まれる健常者1名\n100歳代：1名","en":"1 healthy individual included in Dataset1\n100s: 1"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血由来PBMCから分取したCD4⁺CD27⁻CD28⁻ T細胞およびCD4⁺CD45RO⁺CD28⁺ T細胞から抽出したRNA","en":"RNAs extracted from CD4⁺CD27⁻CD28⁻ T cells and CD4⁺CD45RO⁺CD28⁺ T cells sorted from peripheral blood mononuclear cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nextera-xt-dna-library-prep-kit","label":{"en":"Nextera XT DNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-x","label":{"en":"Illumina NovaSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":151,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":151,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]}],"dataVolume":1145621534375,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"txt","label":{"en":"TXT"}},{"code":"tar","label":{"en":"TAR"}}]},{"id":"E-GEAD-1308","research":"hum0600","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1308","datePublished":"2026-09-07","dateModified":"2026-09-07","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq）","en":"NGS (scRNA-seq)"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"甲状腺未分化がん（ICD10：C73）：3症例\n腫瘍組織：3検体\n甲状腺乳頭がん（ICD10：C73）：3症例\n腫瘍組織：3検体","en":"undifferentiated thyroid carcinoma (ICD10: C73): 3 cases\ntumor tissue: 3 samples\npapillary thyroid carcinoma (ICD10: C73): 3 cases\ntumor tissue: 3 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}}],"name":{"ja":"甲状腺未分化がん","en":"undifferentiated thyroid carcinoma"}},{"terms":[{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}}],"name":{"ja":"甲状腺乳頭がん","en":"papillary thyroid carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織より単離した細胞から抽出したRNA","en":"RNA extracted from a single cell isolated from tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-3-v3-1","label":{"en":"Chromium Next GEM Single Cell 3' v3.1"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-x","label":{"en":"Illumina HiSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":90,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"STAR","en":"STAR"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"RのSeuratパッケージを用い、各サンプルに対して以下の基準で低クオリティ細胞およびダブレットを除外した\n- 検出遺伝子数（nFeature_RNA）：各サンプルの検出遺伝子数分布において、上下各0.5% tailの細胞を除外\n- ミトコンドリア遺伝子比率（percent.mt）：ミトコンドリア由来の転写産物割合が 80%以上（percent.mt ≥ 80%）の死細胞を除外\n- ダブレット除去：ソフトウェア DoubletFinder (version 2.0.6) を使用し、2個以上の細胞が1つの液滴に入ってしまった擬陽性データを除外","en":"Using the Seurat package in R, low-quality cells were removed by discarding the bottom and top 0.5% tails of the nFeature_RNA distribution per sample and cells with high mitochondrial content (percent.mt ≥ 80%). Doublets were identified with DoubletFinder (version 2.0.6)."}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger (v7.1.0)","en":"Cell Ranger (v7.1.0)"}},{"key":"gene-number","label":{"ja":"遺伝子数","en":"Gene count"},"type":"number","numbers":[{"value":30000,"unit":null,"high":40000,"suffix":{"ja":" genes (約)","en":" genes (Approx.)"}}]},{"key":"processed-data-type","label":{"ja":"加工データの種類","en":"Processed data type"},"type":"vocabulary","terms":[{"code":"gene-expression-matrix","label":{"ja":"遺伝子発現行列","en":"Gene expression matrix"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":233664275,"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"hdf5","label":{"en":"HDF5"}}]},{"id":"JGAD000767","research":"hum0290","url":"https://humandbs.dbcls.jp/dataset/JGAD000767","datePublished":"2025-06-09","dateModified":"2026-08-27","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS）\nNGS（scRNA-seq、scATAC-seq）\nCyTOF\nOlink\nメチル化アレイ","en":"NGS (WGS)\nNGS (scRNA-seq, scATAC-seq)\nCyTOF\nOlink\nMethylation array"}}],"experiments":[{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：51名（51検体）","en":"51 healthy volunteers (51 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":51,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"adult","label":{"ja":"成人","en":"Adult"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から抽出したDNA","en":"DNAs extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"magattract-hmw-dna-kit","label":{"en":"MagAttract HMW DNA Kit"}},{"code":"truseq-dna-pcr-free-library-prep-kit","label":{"en":"TruSeq DNA PCR-Free Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化（Covaris）","en":"Ultrasonic fragmentation (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-t7","label":{"en":"MGI DNBSEQ-T7"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"scRNA-seq + scATAC-seq","en":"scRNA-seq + scATAC-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：94名（125検体）","en":"94 healthy volunteers (125 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":94,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"adult","label":{"ja":"成人","en":"Adult"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血より単離した細胞から抽出したDNAおよびRNA","en":"DNAs/RNAs extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}},{"code":"scatac-seq","label":{"en":"scATAC-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-multiome-atac-gene-expression","label":{"en":"Chromium Next GEM Single Cell Multiome ATAC + Gene Expression"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}},{"code":"illumina-novaseq-x","label":{"en":"Illumina NovaSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":118,"unit":"bp","high":null,"prefix":{"ja":"scRNA-seq: ","en":"scRNA-seq: "}},{"value":99,"unit":"bp","high":null,"prefix":{"ja":"scATAC-seq: ","en":"scATAC-seq: "}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"CellRanger-arc（ver2.0.0）","en":"CellRanger-arc (ver2.0.0)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Mass cytometry (CyTOF)","en":"Mass cytometry (CyTOF)"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：43名（43検体）","en":"43 healthy volunteers (43 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":43,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から単離した細胞","en":"peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cytof","label":{"en":"CyTOF"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"免疫応答に関する30蛋白質","en":"30 proteins related to immune response"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"maxpar-direct-immune-profiling-assay","label":{"en":"Maxpar Direct Immune Profiling Assay"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"fluidigm-helios","label":{"en":"Fluidigm Helios"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Maxpar Pathsetter （Cat. #401018）","en":"Maxpar Pathsetter (Cat. #401018)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Proteomics (Olink, batch1: 2941 / batch2: 2939 proteins)","en":"Proteomics (Olink, batch1: 2941 / batch2: 2939 proteins)"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：35名（35検体）","en":"35 healthy volunteers (35 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":35,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"血漿","en":"Plasma"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"plasma","label":{"ja":"血漿","en":"Plasma"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"proteomics","label":{"en":"Proteomics"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"olink-explore-3072","label":{"en":"Olink Explore 3072"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"olink-explore-3072","label":{"en":"Olink Explore 3072"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":null},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":null},{"key":"normalization","label":{"ja":"正規化","en":"Normalization"},"type":"text","text":{"ja":"NPX manager","en":"NPX manager"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"NPX manager","en":"NPX manager"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"メチル化アレイ","en":"Methylation array"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：51名（88検体）","en":"51 healthy volunteers (88 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":51,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から抽出したDNA","en":"DNAs extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"methylation-array","label":{"en":"Methylation array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ez-dna-methylation-kit","label":{"en":"EZ DNA Methylation Kit"}},{"code":"infinium-humanmethylation450-beadchip-kit","label":{"en":"Infinium HumanMethylation450 BeadChip Kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-infinium-methylationepic","label":{"en":"Illumina Infinium MethylationEPIC"}}]},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":null,"en":null}},{"key":"normalization","label":{"ja":"正規化","en":"Normalization"},"type":"text","text":{"ja":null,"en":null}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"iScan system、GenomeStudio Software","en":"iScan system, GenomeStudio Software"}},{"key":"probe-number","label":{"ja":"プローブ数","en":"Probe count"},"type":"number","numbers":[{"value":865918,"unit":null,"high":null,"suffix":{"ja":" プローブ","en":" probes"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":14044585423748,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"txt","label":{"en":"TXT"}},{"code":"csv","label":{"en":"CSV"}}]},{"id":"JGAD001062","research":"hum0358","url":"https://humandbs.dbcls.jp/dataset/JGAD001062","datePublished":"2026-08-21","dateModified":"2026-08-21","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"Xenium In Situ Gene Expression","en":"Xenium In Situ Gene Expression"}}],"experiments":[{"label":{"ja":"Spatial transcriptomics","en":"Spatial transcriptomics"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮頸部小細胞神経内分泌がん（SCNEC）と腺がんとの混合組織型を呈するHPV18陽性子宮頸がん（ICD10：C539）：1症例\n腫瘍組織（FFPE）：1検体","en":"HPV18-positive cervical cancer exhibiting a mixed histology of small cell neuroendocrine carcinoma (SCNEC) and adenocarcinoma (ICD10: C539): 1 case\ntumor tissues (FFPE): 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C539","label":{"ja":"子宮頚（部），部位不明","en":"Malignant neoplasm: Cervix uteri, unspecified"}}],"name":{"ja":"子宮頸部小細胞神経内分泌がん（SCNEC）と腺がんとの混合組織型を呈するHPV18陽性子宮頸がん","en":"HPV18-positive cervical cancer exhibiting a mixed histology of small cell neuroendocrine carcinoma (SCNEC) and adenocarcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sex","label":{"ja":"性別","en":"Sex"},"type":"vocabulary","terms":[{"code":"female","label":{"ja":"女性","en":"Female"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織（FFPE）","en":"tumor tissues (FFPE)"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"330遺伝子（Xenium Human Breast Gene Expression Panel：280遺伝子、Xenium Add-on Custom 1 to 50 Gene Panel：子宮頸がん特異的50遺伝子）","en":"330 genes (Xenium Human Breast Gene Expression Panel: 280 genes + Xenium Add-on Custom 1 to 50 Gene Panel: 50 cervical cancer-specific genes)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"xenium-slides-sample-prep-reagents","label":{"en":"Xenium Slides & Sample Prep Reagents"}},{"code":"xenium-decoding-reagents","label":{"en":"Xenium Decoding Reagents"}},{"code":"xenium-decoding-consumables","label":{"en":"Xenium Decoding Consumables"}},{"code":"xenium-cell-segmentation-add-on-kit","label":{"en":"Xenium Cell Segmentation Add-on kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"10x-genomics-xenium-analyzer","label":{"en":"10x Genomics Xenium Analyzer"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"R（version 4.4.2）、Seurat（version 5.3）、Monocle3（version 1.3.7）、Slingshot、tradeSeq、DESeq2（version 1.48.1）","en":"R (version 4.4.2), Seurat (version 5.3), Monocle3 (version 1.3.7), Slingshot, tradeSeq, DESeq2 (version 1.48.1)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":27871113286,"fileFormats":[{"code":"parquet","label":{"en":"PARQUET"}},{"code":"hdf5","label":{"en":"HDF5"}},{"code":"tiff","label":{"en":"TIFF"}}]},{"id":"E-GEAD-1107","research":"hum0511","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1107","datePublished":"2026-07-03","dateModified":"2026-08-20","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scTCR-seq、scCITE-seq）","en":"NGS (scRNA-seq, scTCR-seq, scCITE-seq) processed data"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者28名 (JGAD000957/データセット1)\n70～90歳代: 8名\n100歳代: 10名\n110歳代: 10名","en":"28 healthy individuals (JGAD000957/Dataset 1)\n70s-90s: 8\n100s: 10\n110s: 10"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":34,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":72,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":91,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"scTCR-seq","en":"scTCR-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者28名 (JGAD000957/データセット1)\n70～90歳代: 8名\n100歳代: 10名\n110歳代: 10名","en":"28 healthy individuals (JGAD000957/Dataset 1)\n70s-90s: 8\n100s: 10\n110s: 10"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":34,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"tcr-seq","label":{"en":"TCR-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-v-d-j-enrichment-kit-human-t-cell","label":{"en":"Chromium Single Cell V(D)J Enrichment Kit, Human T Cell"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":72,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":91,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"scCITE-seq","en":"scCITE-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者28名 (JGAD000957/データセット1)\n70～90歳代: 8名\n100歳代: 10名\n110歳代: 10名","en":"28 healthy individuals (JGAD000957/Dataset 1)\n70s-90s: 8\n100s: 10\n110s: 10"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":34,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cite-seq","label":{"en":"CITE-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"CD3、CD4、CD8、CD25、CD27、CD28、CD45RA、CD45RO、CD95、TCRD、CCR7、IL7RA、PD-1、CD161、KLRG1、CD56","en":"CD3, CD4, CD8, CD25, CD27, CD28, CD45RA, CD45RO, CD95, TCRD, CCR7, IL7RA, PD-1, CD161, KLRG1, CD56"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-5-feature-barcode-library-kit","label":{"en":"Chromium Single Cell 5' Feature Barcode Library Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":0,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":15,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":null},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]}],"dataVolume":354810528,"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"tar","label":{"en":"TAR"}}]},{"id":"JGAD000974","research":"hum0455","url":"https://humandbs.dbcls.jp/dataset/JGAD000974","datePublished":"2026-04-10","dateModified":"2026-08-20","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS：PromethION）\nNGS（WGS：Novaseq 6000）\nXenium In Situ Gene Expression\nNGS（Visium Spatial Gene Expression）、病理画像\nNGS（snRNA-seq）\nNGS（STOmics）\nSpatial Proteomics","en":"NGS (WGS: PromethION)\nNGS (WGS: Novaseq 6000)\nXenium In Situ Gene Expression\nNGS (Visium Spatial Gene Expression), Histological image\nNGS (snRNA-seq)\nNGS (STOmics)\nSpatial Proteomics"}}],"experiments":[{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：21症例（筑波14例、自治医7例）\n凍結検体 腫瘍組織：21検体\n非腫瘍組織：21検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 21 cases\nfrozen specimens\n- tumor tissues: 21 samples\n- non-tumor tissues: 21 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":21,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"凍結検体の腫瘍組織ならびに非腫瘍組織より抽出したDNA","en":"DNAs extracted from frozen specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ligation-sequencing-kit-sqk-lsk114","label":{"en":"Ligation Sequencing Kit (SQK-LSK114)"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"oxford-nanopore-technologies-promethion","label":{"en":"Oxford Nanopore Technologies PromethION"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":null},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Guppy（version 6.4.6および6.5.7）、Minimap2（version 2.24）","en":"Guppy (version 6.4.6 and 6.5.7), Minimap2 (version 2.24)"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":null,"en":null}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Modkit（version 0.3.1）","en":"Modkit (version 0.3.1)"}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":null},{"key":"coverage-breadth","label":{"ja":"カバレッジ (割合)","en":"Coverage (breadth)"},"type":"number","numbers":null},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：1症例（筑波1例）\n凍結検体 腫瘍組織：1検体\n非腫瘍組織：1検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 1 case\nfrozen specimens\n- tumor tissues: 1 sample\n- non-tumor tissues: 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"凍結検体の腫瘍組織ならびに非腫瘍組織より抽出したDNA","en":"DNAs extracted from frozen specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-nano-dna-library-prep-kit","label":{"en":"TruSeq Nano DNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化（Covaris）","en":"Ultrasonic fragmentation (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":300,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Xenium In Situ Gene Expression","en":"Xenium In Situ Gene Expression"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：33症例（筑波26例、自治医7例）\nFFPE検体 腫瘍組織：36検体（筑波29検体、自治医7検体）","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 33 cases\nFFPE specimen\n- tumor tissue: 36 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":33,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"FFPE検体","en":"FFPE specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"302遺伝子（Human Lung panel：202遺伝子, カスタム：100遺伝子）","en":"302 genes (Human Lung panel: 202 genes, custom: 100 genes)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"xenium-decoding-consumables","label":{"en":"Xenium Decoding Consumables"}},{"code":"xenium-decoding-reagents","label":{"en":"Xenium Decoding Reagents"}},{"code":"xenium-slides-sample-prep-reagents","label":{"en":"Xenium Slides & Sample Prep Reagents"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"10x-genomics-xenium-analyzer","label":{"en":"10x Genomics Xenium Analyzer"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"xenium-1.3.0.6、xenium-1.4.0.7、xenium-1.7.1.0、xenium-2.0.0.10","en":"xenium-1.3.0.6, xenium-1.4.0.7, xenium-1.7.1.0, xenium-2.0.0.10"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Visium Spatial Gene Expression, Histological image","en":"Visium Spatial Gene Expression, Histological image"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：19症例（筑波12例、自治医7例）\n腫瘍組織：19検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 19 cases\n- tumor tissues: 19 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":19,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織より抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"histological-image","label":{"en":"Histological image"}},{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"sample-processing","label":{"ja":"試料の処理","en":"Sample processing"},"type":"text","text":{"ja":"組織染色: HE染色","en":"Histological staining: hematoxylin-eosin staining"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"visium-spatial-gene-expression","label":{"en":"Visium Spatial Gene Expression"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":118,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"spaceranger-1.3.1","en":"spaceranger-1.3.1"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"snRNA-seq","en":"snRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：6症例（筑波4例、自治医2例）\n腫瘍組織：6検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 6 cases\n- tumor tissues: 6 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織から抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"snrna-seq","label":{"ja":"snRNA-seq","en":"snRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-nuclei-isolation-kit","label":{"en":"Chromium Nuclei Isolation Kit"}},{"code":"chromium-gem-x-single-cell-3-v4","label":{"en":"Chromium GEM-X Single Cell 3' v4"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":118,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"STOmics","en":"STOmics"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：2症例（筑波2例）\n腫瘍組織：2検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 2 cases\n- tumor tissues: 2 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":2,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織から抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"stereo-seq-transcriptomics-set","label":{"en":"Stereo-Seq Transcriptomics Set"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-t7","label":{"en":"MGI DNBSEQ-T7"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":135,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Xenium In Situ Gene Expression","en":"Xenium In Situ Gene Expression"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：13症例（筑波7例、自治医6例）\nFFPE検体 腫瘍組織：13検体（筑波7検体、自治医6検体）","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 13 cases\nFFPE specimen\n- tumor tissue: 13 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":13,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"FFPE検体","en":"FFPE specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"5099遺伝子\nXenium Prime 5K Human Pan Tissue & Pathways Panel : 5001遺伝子、Add-on custom panels：98遺伝子","en":"5099genes\nXenium Prime 5K Human Pan Tissue & Pathways Panel : 5001 genes, Add-on custom panels：98genes"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"xenium-slides-sample-prep-reagents","label":{"en":"Xenium Slides & Sample Prep Reagents"}},{"code":"xenium-decoding-reagents","label":{"en":"Xenium Decoding Reagents"}},{"code":"xenium-decoding-consumables","label":{"en":"Xenium Decoding Consumables"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"10x-genomics-xenium-analyzer","label":{"en":"10x Genomics Xenium Analyzer"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"xenium-4.0.1.0","en":"xenium-4.0.1.0"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Spatial Proteomics","en":"Spatial Proteomics"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：13症例（筑波7例、自治医6例）\n腫瘍組織：13検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 13 cases\nFFPE specimen\n- tumor tissue: 13 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":13,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"FFPE検体","en":"FFPE specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-proteomics","label":{"en":"Spatial proteomics"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"79遺伝子","en":"79 genes"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"staining-kit-for-phenocycler","label":{"en":"Staining Kit for PhenoCycler"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"akoya-biosciences-phenocycler","label":{"en":"Akoya Biosciences PhenoCycler"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"PhenoCycler-Fusion Acquisition Software","en":"PhenoCycler-Fusion Acquisition Software"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":7870279190807,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"bed","label":{"en":"BED"}},{"code":"tsv","label":{"en":"TSV"}},{"code":"csv","label":{"en":"CSV"}},{"code":"xlsx","label":{"en":"XLSX"}},{"code":"json","label":{"en":"JSON"}},{"code":"mtx","label":{"en":"MTX"}},{"code":"hdf5","label":{"en":"HDF5"}},{"code":"png","label":{"en":"PNG"}},{"code":"qptiff","label":{"en":"QPTIFF"}},{"code":"tar","label":{"en":"TAR"}}]},{"id":"NHA000210","research":"hum0343","url":"https://humandbs.dbcls.jp/dataset/NHA000210","datePublished":"2026-08-13","dateModified":"2026-08-13","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"重症COVID19感染者のGWAS集計情報","en":"GWAS for severe COVID-19"}}],"experiments":[{"label":{"ja":"Genome wide SNPs","en":"Genome wide SNPs"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"重症COVID-19感染者 （ICD-10：U071）：3,087症例\n対照者：55,896名","en":"severe COVID-19 (ICD-10: U071): 3,087 cases\nHealthy controls: 55,896 individuals"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"U071","label":{"ja":"コロナウイルス感染症2019，ウイルスが同定されたもの","en":"COVID-19, virus identified"}}],"name":{"ja":"重症COVID-19感染者","en":"severe COVID-19"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":58983,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から抽出したDNA","en":"DNAs extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"genotyping-by-array","label":{"en":"Genotyping by array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"infinium-asian-screening-array-kit","label":{"en":"Infinium Asian Screening Array Kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-infinium-asian-screening-array","label":{"en":"Illumina Infinium Asian Screening Array"}}]},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"サンプルQC: 以下のサンプルを除外\n(1) sample call rate < 0.98\n(2) ePCA解析をもとにEast Asianから外れる\n(3) 重複・双子\nバリアントQC: 以下のバリアントを除外\n(1) variant call rate < 0.99\n(2) アレルカウント < 5\n(3) Hardy-Weinberg平衡P値 < 1.0×10^-6\n(4) 日本人referenceからアレル頻度が5%以上の乖離\nin houseの日本人WGS (n=11,754) をreferenceとしimputationを実施した。Imputation INFO > 0.7、アレル頻度 > 0.005でfilteringし、年齢、性別、年齢×年齢、年齢×性別、PC1~10を共変量としてREGENIEを用いてゲノムワイド関連解析を行った。","en":"Sample QC: We excluded samples with\n(1) sample call rate < 0.98\n(2) deviation from the East Asian cluster based on PCA\n(3) duplicate/twin samples\nVariant QC: We excluded variants with\n(1) variant call rate < 0.99\n(2) allele count < 5\n(3) Hardy-Weinberg equilibrium P < 1.0 × 10^-6\n(4) >5% allele frequency deviation from the Japanese reference population\nGenotype imputation was performed using an in-house Japanese whole-genome sequencing reference panel (n = 11,754). Variants with imputation INFO > 0.7 and allele frequency > 0.005 were retained. Genome-wide association analysis was conducted using REGENIE with age, sex, age × age, age × sex, and PC1-10 as covariates."}},{"key":"imputation","label":{"ja":"インピュテーション","en":"Imputation"},"type":"text","text":{"ja":"haplotype phasing: SHAPEIT4\nimputation: Minimac4","en":"haplotype phasing: SHAPEIT4\nimputation: Minimac4"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"genotyping: GenomeStudio\n関連解析: REGENIE","en":"genotyping: GenomeStudio\nassociation analysis: REGENIE"}},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":8993355,"unit":null,"high":null}]},{"key":"processed-data-type","label":{"ja":"加工データの種類","en":"Processed data type"},"type":"vocabulary","terms":[{"code":"imputed-genotype-data","label":{"ja":"インピュテーション済み遺伝子型データ","en":"Imputed genotype data"}}]},{"key":"has-phenotype-data","label":{"ja":"表現型データの有無","en":"Phenotype data"},"type":"vocabulary","terms":[{"code":"included","label":{"ja":"あり","en":"Included"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"zip","label":{"en":"ZIP"}}]},{"id":"JGAD000870","research":"hum0405","url":"https://humandbs.dbcls.jp/dataset/JGAD000870","datePublished":"2026-08-07","dateModified":"2026-08-07","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS、Exome、Amplicon-seq、RNA-seq、scRNA-seq/ADT-seq/TCR-seq、CUT&RUN-seq）\nメチル化アレイ","en":"NGS (WGS, Exome, Amplicon-seq, RNA-seq, scRNA-seq/ADT-seq/TCR-seq, CUT&RUN-seq)\nMethylation array"}}],"experiments":[{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"CAEBV（ICD10：C84.5）：18症例\nEBV感染細胞、非感染細胞：36検体","en":"CAEBV (ICD10: C84.5): 18 cases\nEBV-infected cells and uninfected cells: 36 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C845","label":{"ja":"その他の成熟T/NK細胞リンパ腫","en":"Other mature T/NK-cell lymphomas"}}],"name":{"ja":"CAEBV","en":"CAEBV"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":18,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"EBV感染細胞および非感染細胞から抽出したDNA","en":"DNAs extracted from EBV-infected cells and uninfected cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"ebv-infected-cell","label":{"en":"EBV-infected cell"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"lotus-dna-library-prep-kit","label":{"en":"Lotus DNA Library Prep Kit"}},{"code":"illumina-dna-pcr-free-prep","label":{"en":"Illumina DNA PCR-Free Prep"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応\nオンビーズタグメンテーション","en":"Restriction enzyme reaction\non-bead tagmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}},{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Genomon v2.6.2","en":"Genomon v2.6.2"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":null,"en":null}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":45,"unit":"x","high":null,"prefix":{"ja":"14症例 腫瘍: ","en":"14 cases, tumor: "},"suffix":{"ja":" (超)","en":" (More than)"}},{"value":30,"unit":"x","high":null,"prefix":{"ja":"14症例 正常: ","en":"14 cases, normal: "},"suffix":{"ja":" (超)","en":" (More than)"}},{"value":100,"unit":"x","high":null,"prefix":{"ja":"4症例 腫瘍: ","en":"4 cases, tumor: "},"suffix":{"ja":" (超)","en":" (More than)"}},{"value":30,"unit":"x","high":null,"prefix":{"ja":"4症例 正常: ","en":"4 cases, normal: "},"suffix":{"ja":" (超)","en":" (More than)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Exome","en":"Exome"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"CAEBV（ICD10：C84.5）：23症例\nEBV感染細胞、非感染細胞：46検体","en":"CAEBV (ICD10: C84.5): 23 cases\nEBV-infected cells and uninfected cells: 46 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C845","label":{"ja":"その他の成熟T/NK細胞リンパ腫","en":"Other mature T/NK-cell lymphomas"}}],"name":{"ja":"CAEBV","en":"CAEBV"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":23,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"EBV感染細胞および非感染細胞から抽出したDNA","en":"DNAs extracted from EBV-infected cells and uninfected cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"ebv-infected-cell","label":{"en":"EBV-infected cell"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"lotus-dna-library-prep-kit","label":{"en":"Lotus DNA Library Prep Kit"}},{"code":"xgen-exome-research-panel","label":{"en":"xGen Exome Research Panel"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Restriction enzyme reaction"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Genomon v2.6.2","en":"Genomon v2.6.2"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":null,"en":null}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":100,"unit":"x","high":null,"prefix":{"ja":"腫瘍: ","en":"Tumor: "},"suffix":{"ja":" (超)","en":" (More than)"}},{"value":100,"unit":"x","high":null,"prefix":{"ja":"正常: ","en":"Normal: "},"suffix":{"ja":" (超)","en":" (More than)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Amplicon-seq","en":"Amplicon-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"CAEBV（ICD10：C84.5）：64症例\nEBV感染細胞、非感染細胞、末梢血：185検体","en":"CAEBV (ICD10: C84.5): 64 cases\nEBV-infected cells, uninfected cells and peripheral blood cells: 185 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C845","label":{"ja":"その他の成熟T/NK細胞リンパ腫","en":"Other mature T/NK-cell lymphomas"}}],"name":{"ja":"CAEBV","en":"CAEBV"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":64,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"EBV感染細胞、非感染細胞および末梢血から抽出したDNA","en":"DNAs extracted from EBV-infected cells, uninfected cells and peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"ebv-infected-cell","label":{"en":"EBV-infected cell"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"amplicon-seq","label":{"en":"Amplicon-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":"1：399 遺伝子\n2：xGen CNV Backbone Panel-Tech Access（IDT）\n3：EBV type 1（RefSeq accession number; NC_007605）、type 2 （RefSeq accession number; NC_009334）","en":"1: 399 genes\n2: xGen CNV Backbone Panel-Tech Access (IDT)\n3: EBV type 1 (RefSeq accession number; NC_007605) and type 2 (RefSeq accession number; NC_009334)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"lotus-dna-library-prep-kit","label":{"en":"Lotus DNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Restriction enzyme reaction"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}},{"code":"ebv-type-1","label":{"en":"EBV type 1"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Genomon v2.6.2","en":"Genomon v2.6.2"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":null,"en":null}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":1000,"unit":"x","high":null,"prefix":{"ja":"399遺伝子: ","en":"399 genes: "}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"CAEBV（ICD10：C84.5）：28症例\nEBV感染細胞、細胞株\nIM（ICD10：B27.0、B27.9）：6症例\nNK細胞\n健常人：4名\nNK細胞\n合計：52検体","en":"CAEBV (ICD10: C84.5): 28 cases\nEBV-infected cells and cell-lines\nIM (ICD10: B27.0, B27.9): 6 cases\nNK cells\n4 healthy individuals\nNK cells\n52 samples in total"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C845","label":{"ja":"その他の成熟T/NK細胞リンパ腫","en":"Other mature T/NK-cell lymphomas"}}],"name":{"ja":"CAEBV","en":"CAEBV"}},{"terms":[{"code":"B270","label":{"ja":"ガンマヘルペスウイルス（性）単核症","en":"Gammaherpesviral mononucleosis"}},{"code":"B279","label":{"ja":"伝染性単核症，詳細不明","en":"Infectious mononucleosis, unspecified"}}],"name":{"ja":"IM","en":"IM"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":38,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"EBV感染細胞、細胞株およびNK細胞から抽出したRNA","en":"RNAs extracted from EBV-infected cells, cell-lines and NK cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"ebv-infected-cell","label":{"en":"EBV-infected cell"}},{"code":"nk-cell","label":{"ja":"NK 細胞","en":"NK cell"}},{"code":"cell-line","label":{"ja":"細胞株","en":"Cell line"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-ii-directional-rna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra II Directional RNA Library Prep Kit for Illumina"}},{"code":"nebnext-rrna-depletion-kit","label":{"en":"NEBNext rRNA Depletion Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"熱処理","en":"Heat treatment"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}},{"code":"ebv-type-1","label":{"en":"EBV type 1"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Genomon v2.6.2","en":"Genomon v2.6.2"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":null,"en":null}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Methylation Array","en":"Methylation Array"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"CAEBV（ICD10：C84.5）：32症例\nEBV感染細胞、細胞株\nIM（ICD10：B27.0、B27.9）：6症例\nNK細胞\n健常人：4名\nNK細胞\n合計：54検体","en":"CAEBV (ICD10: C84.5): 32 cases\nEBV-infected cells and cell-lines\nIM (ICD10: B27.0, B27.9): 6 cases\nNK cells\n4 healthy individuals\nNK cells\n54 samples in total"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C845","label":{"ja":"その他の成熟T/NK細胞リンパ腫","en":"Other mature T/NK-cell lymphomas"}}],"name":{"ja":"CAEBV","en":"CAEBV"}},{"terms":[{"code":"B270","label":{"ja":"ガンマヘルペスウイルス（性）単核症","en":"Gammaherpesviral mononucleosis"}},{"code":"B279","label":{"ja":"伝染性単核症，詳細不明","en":"Infectious mononucleosis, unspecified"}}],"name":{"ja":"IM","en":"IM"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":42,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"EBV感染細胞、細胞株およびNK細胞から抽出したDNA","en":"DNAs extracted from EBV-infected cells, cell-lines and NK cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"ebv-infected-cell","label":{"en":"EBV-infected cell"}},{"code":"nk-cell","label":{"ja":"NK 細胞","en":"NK cell"}},{"code":"cell-line","label":{"ja":"細胞株","en":"Cell line"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"methylation-array","label":{"en":"Methylation array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"infinium-methylationepic-beadchip-kit","label":{"en":"Infinium MethylationEPIC BeadChip Kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-infinium-methylationepic","label":{"en":"Illumina Infinium MethylationEPIC"}}]},{"key":"probe-number","label":{"ja":"プローブ数","en":"Probe count"},"type":"number","numbers":null},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"scRNA-seq/ADT-seq/TCR-seq","en":"scRNA-seq/ADT-seq/TCR-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"CAEBV（ICD10：C84.5）：6症例\nIM（ICD10：B27.0、B27.9）：2症例\n健常人：2名\n末梢血単核球（PBMC）：合計10検体","en":"CAEBV (ICD10: C84.5): 6 cases\nIM (ICD10: B27.0, B27.9): 2 cases\n2 healthy individuals\nperipheral blood mononuclear cells (PBMC): 10 samples in total"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C845","label":{"ja":"その他の成熟T/NK細胞リンパ腫","en":"Other mature T/NK-cell lymphomas"}}],"name":{"ja":"CAEBV","en":"CAEBV"}},{"terms":[{"code":"B270","label":{"ja":"ガンマヘルペスウイルス（性）単核症","en":"Gammaherpesviral mononucleosis"}},{"code":"B279","label":{"ja":"伝染性単核症，詳細不明","en":"Infectious mononucleosis, unspecified"}}],"name":{"ja":"IM","en":"IM"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":10,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PBMCより抽出したRNA","en":"RNAs extracted from PBMCs"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"pbmc","label":{"ja":"末梢血単核球 (PBMC)","en":"PBMC"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}},{"code":"tcr-seq","label":{"en":"TCR-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}},{"code":"chromium-single-cell-v-d-j","label":{"en":"Chromium Single Cell V(D)J"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Restriction enzyme reaction"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"CUT＆RUN-seq","en":"CUT＆RUN-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"CAEBV（ICD10：C84.5）：2症例\n細胞株\n健常人：1名\nNK細胞\n合計： 24検体","en":"CAEBV (ICD10: C84.5): 2 cases\ncell-lines\n1 healthy individual\nNK cells\n24 samples in total"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C845","label":{"ja":"その他の成熟T/NK細胞リンパ腫","en":"Other mature T/NK-cell lymphomas"}}],"name":{"ja":"CAEBV","en":"CAEBV"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":3,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"細胞株およびNK細胞から抽出したDNA","en":"DNAs extracted from cell-lines and NK cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"nk-cell","label":{"ja":"NK 細胞","en":"NK cell"}},{"code":"cell-line","label":{"ja":"細胞株","en":"Cell line"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cut-run-seq","label":{"en":"CUT&RUN-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"cutana-chic-cut-run-kit-version-3","label":{"en":"CUTANA ChIC/CUT&RUN Kit Version 3"}},{"code":"nebnext-ultra-ii-dna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra II DNA Library Prep Kit for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Restriction enzyme reaction"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"CUT&RUNTools 2.0 package","en":"CUT&RUNTools 2.0 package"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":null,"en":null}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":7615585614320,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"bam","label":{"en":"BAM"}},{"code":"bai","label":{"en":"BAI"}},{"code":"idat","label":{"en":"IDAT"}}]},{"id":"JGAD001073","research":"hum0444","url":"https://humandbs.dbcls.jp/dataset/JGAD001073","datePublished":"2026-08-04","dateModified":"2026-08-04","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Exome）\nSNP-chip","en":"NGS (Exome)\nSNP-chip"}}],"experiments":[{"label":{"ja":"WES","en":"WES"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"nevus spilus-type congenital melanocytic nevus（NS-CMN）（ICD10：D22.5）：2症例\n皮膚：6検体（病変：6検体）","en":"nevus spilus-type congenital melanocytic nevus (NS-CMN) (ICD10: D22.5): 2 cases\nskin: 6 samples (lesion: 6 samples)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"D225","label":{"ja":"体幹のメラニン細胞性母斑","en":"Melanocytic naevi of trunk"}}],"name":{"ja":"nevus spilus-type congenital melanocytic nevus（NS-CMN）","en":"nevus spilus-type congenital melanocytic nevus (NS-CMN)"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":2,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"皮膚から抽出したDNA","en":"DNAs extracted from skin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"skin","label":{"ja":"皮膚","en":"Skin"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"sureselect-human-all-exon-v6","label":{"en":"SureSelect Human All Exon V6"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"genome wide SNPs","en":"genome wide SNPs"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"nevus spilus-type congenital melanocytic nevus（NS-CMN）（ICD10：D22.5）：3症例\n皮膚：54検体（病変：54検体）\n末梢血：3検体\nnevus spilus-type congenital melanocytic nevus（NS-CMN）（ICD10：D22.5）：1症例\n培養細胞：11検体（病変：11検体）","en":"nevus spilus-type congenital melanocytic nevus (NS-CMN) (ICD10: D22.5): 3 cases\nskin: 54 samples (lesion: 54 samples)\nperipheral blood: 3 samples\nnevus spilus-type congenital melanocytic nevus (NS-CMN) (ICD10: D22.5): 1 case\ncultured cell: 11 samples (lesion: 11 samples)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"D225","label":{"ja":"体幹のメラニン細胞性母斑","en":"Melanocytic naevi of trunk"}}],"name":{"ja":"nevus spilus-type congenital melanocytic nevus（NS-CMN）","en":"nevus spilus-type congenital melanocytic nevus (NS-CMN)"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":4,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"皮膚、末梢血および培養細胞から抽出したDNA","en":"DNAs extracted from skin, peripheral blood and cultured cell"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"skin","label":{"ja":"皮膚","en":"Skin"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"cultured-cell","label":{"en":"Cultured cell"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"genotyping-by-array","label":{"en":"Genotyping by array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"infinium-asian-screening-array-kit","label":{"en":"Infinium Asian Screening Array Kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-infinium-asian-screening-array","label":{"en":"Illumina Infinium Asian Screening Array"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"GenomeStudio 2.0","en":"GenomeStudio 2.0"}},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":659184,"unit":null,"high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":40397036309,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"idat","label":{"en":"IDAT"}}]},{"id":"E-GEAD-1251","research":"hum0197","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1251","datePublished":"2026-08-03","dateModified":"2026-08-03","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"多発性硬化症のscRNA-seqの統合データ","en":"Integrated single-cell object data of PBMCs from 20 MS patients"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"多発性硬化症（MS）（ICD10：G35）：20症例","en":"MS (ICD10: G35): 20 cases"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"G35","label":{"ja":"多発性硬化症","en":"Multiple sclerosis"}}],"name":{"ja":"多発性硬化症（MS）","en":"MS"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":20,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PBMCから抽出したRNA","en":"RNAs extracted from PBMC"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"pbmc","label":{"ja":"末梢血単核球 (PBMC)","en":"PBMC"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v1-1","label":{"en":"Chromium Next GEM Single Cell 5' v1.1"}},{"code":"chromium-next-gem-chip-g-single-cell-kit","label":{"en":"Chromium Next GEM Chip G Single Cell Kit"}},{"code":"single-index-kit-t-set-a","label":{"en":"Single Index Kit T Set A"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":90,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"STAR","en":"STAR"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"We processed them with the remove-background function of CellBender (v0.1.0) to remove cell-free ambient RNAs in the droplets and call cells. We removed cells that had fewer than 500 UMIs, fewer than 200 feature counts in each sample, greater than 10% of reads from mitochondrial genes, or greater than 10% of reads from hemoglobin genes. Additionally, putative doublets were removed using Scrublet (v0.2.3) and scds (v1.18.0) for each sample.","en":"We processed them with the remove-background function of CellBender (v0.1.0) to remove cell-free ambient RNAs in the droplets and call cells. We removed cells that had fewer than 500 UMIs, fewer than 200 feature counts in each sample, greater than 10% of reads from mitochondrial genes, or greater than 10% of reads from hemoglobin genes. Additionally, putative doublets were removed using Scrublet (v0.2.3) and scds (v1.18.0) for each sample."}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger v7","en":"Cell Ranger v7"}},{"key":"gene-number","label":{"ja":"遺伝子数","en":"Gene count"},"type":"number","numbers":[{"value":36601,"unit":null,"high":null,"suffix":{"ja":" genes","en":" genes"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":722268847,"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"h5ad","label":{"en":"H5AD"}}]},{"id":"JGAD001065","research":"hum0210","url":"https://humandbs.dbcls.jp/dataset/JGAD001065","datePublished":"2026-08-03","dateModified":"2026-08-03","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"成人T細胞白血病リンパ腫（ICD10：C91.5）：5症例\nPDX 5モデルから採取した腫瘍細胞（1症例から1モデルずつ作製）：計30検体\nvehicle群：3検体ずつ\nMALT1阻害薬CRD-1441551投与群：3検体ずつ","en":"adult T-cell leukemia/lymphoma (ICD10: C91.5): 5 cases\ntumour cells harvested from 5 ATL PDX models (one model per patient): 30 samples in total\n- vehicle: 3 samples each\n- MALT1 inhibitor CRD-1441551-treated: 3 samples each"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C915","label":{"ja":"成人T細胞リンパ腫／白血病［HTLV-1関連］","en":"Adult T-cell lymphoma/leukaemia [HTLV-1-associated]"}}],"name":{"ja":"成人T細胞白血病リンパ腫","en":"adult T-cell leukemia/lymphoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":5,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PDX腫瘍細胞より抽出したRNA","en":"RNAs extracted from tumour cells harvested from PDX models"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-rna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra RNA Library Prep Kit for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠（化学反応、熱処理）","en":"included in the above library construction kit (chemical reaction, heat treatment)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch37","label":{"en":"GRCh37"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"STAR（v2.5.3a）","en":"STAR (v2.5.3a)"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"PDX由来リードから Xenome を用いてマウス由来と判定されたリードを除去し、ヒト由来と判定されたリードのみを抽出。マッピング後は、過剰なミスマッチ・多重マッピング・十分なアラインメント長を満たさないリードを除外した（mapped-only、unmapped 非含有）。","en":"Mouse-derived reads were removed from the PDX reads using Xenome, and only reads identified as human-derived were retained. The retained reads were aligned to UCSC hg19 with STAR (v2.5.3a) using default settings; default alignment filters removed reads with excessive mismatches, excessive multi-mapping, or insufficient aligned length. Only mapped reads are included (unmapped reads excluded)."}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":64840475705,"fileFormats":[{"code":"bam","label":{"en":"BAM"}}]},{"id":"NHA000209","research":"hum0197","url":"https://humandbs.dbcls.jp/dataset/NHA000209","datePublished":"2026-07-31","dateModified":"2026-07-31","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"多発性硬化症のGWAS統計量","en":"GWAS for multiple sclerosis"}}],"experiments":[{"label":{"ja":"genome wide SNPs","en":"genome wide SNPs"},"values":[{"key":"materials-and-participants","label":{"ja":"材料と対象者","en":"Materials and participants"},"type":"text","text":{"ja":"多発性硬化症（MS）（ICD10：G35）：\n日本人集団 MS 688症例、対照健常者205,199名\nヨーロッパ人集団 MS 27,572症例、対照健常者1,436,801名\nアフリカ人集団 MS 819症例、対照健常者155,904名\nアメリカ人集団（MS 295症例、対照健常者45,569名）を加えた多祖先集団 MS 29,374症例、対照健常者1,843,563名","en":"multiple sclerosis (MS) (ICD10: G35):\nJapanese: 688 MS patients and 205,199 controls\nEuropean: 27,572 MS patients and 1,436,801 controls\nAfrican: 819 MS patients and 155,904 controls\nCross-population: 29,374 MS patients and 1,843,563 controls (293 MS patients and 45,569 controls in the US population was included)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"G35","label":{"ja":"多発性硬化症","en":"Multiple sclerosis"}}],"name":{"ja":"多発性硬化症（MS）","en":"multiple sclerosis (MS)"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1872937,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}},{"code":"european","label":{"ja":"ヨーロッパ人","en":"European"}},{"code":"african","label":{"ja":"アフリカ系","en":"African"}},{"code":"american","label":{"ja":"アメリカ人","en":"American"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から抽出したDNA","en":"DNAs extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"sample-provider","label":{"ja":"試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"genotyping-by-array","label":{"en":"Genotyping by array"}}]},{"key":"targets","label":{"ja":"測定対象","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-infinium-asian-screening-array","label":{"en":"Illumina Infinium Asian Screening Array"}},{"code":"illumina-humanomniexpressexome","label":{"en":"Illumina HumanOmniExpressExome"}},{"code":"illumina-humanomniexpress","label":{"en":"Illumina HumanOmniExpress"}},{"code":"illumina-humanexome","label":{"en":"Illumina HumanExome"}}]},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Sample QC:\n日本人集団: We excluded samples with a genotyping call rate < 0.98. We included samples of estimated East Asian ancestry, based on principal component analysis (PCA)\nUK Biobank: We included samples based on the following criteria: (1) concordant with sex information, (2) genotyping call rate > 0.95, (3) heterozygosity rate < +3 S.D., and (4) the white British subset previously reported.\nAll of Us: We included samples based on the following criteria: (1) genotyping call rate > 0.98, (2) heterozygosity rate < +3 S.D., and (3) subjects of European, African and American ancestries identified by PCA-based criteria.\nGenomics England: We included samples of European ancestry, identified by PCA-based criteria.\nPost-imputation QC:\nWe excluded variants with Rsq < 0.7 or minor allele frequency (MAF) < 0.5% (1% for All of Us) .","en":"Sample QC:\nJapanese: We excluded samples with a genotyping call rate < 0.98. We included samples of estimated East Asian ancestry, based on principal component analysis (PCA).\nUK Biobank: We included samples based on the following criteria: (1) concordant with sex information, (2) genotyping call rate > 0.95, (3) heterozygosity rate < +3 S.D., and (4) the white British subset previously reported.\nAll of Us: We included samples based on the following criteria: (1) genotyping call rate > 0.98, (2) heterozygosity rate < +3 S.D., and (3) subjects of European, African and American ancestries identified by PCA-based criteria.\nGenomics England: We included samples of European ancestry, identified by PCA-based criteria.\nPost-imputation QC:\nWe excluded variants with Rsq < 0.7 or minor allele frequency (MAF) < 0.5% (1% for All of Us)."}},{"key":"imputation","label":{"ja":"インピュテーション","en":"Imputation"},"type":"text","text":{"ja":"ハプロタイプフェージング: SHAPEIT4\nインピュテーション: Minimac4","en":"Haplotype phasing: SHAPEIT4\nImputation: Minimac4"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"遺伝子型決定: GenomeStudio\n関連解析: SAIGE、REGENIE、METAL","en":"Genotyping: GenomeStudio\nAssociation analysis: SAIGE, REGENIE, METAL"}},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":8858017,"unit":null,"high":null,"prefix":{"ja":"日本人集団: ","en":"Japanese population: "},"suffix":{"ja":" variants","en":" variants"}},{"value":9970295,"unit":null,"high":null,"prefix":{"ja":"ヨーロッパ人集団: ","en":"European population: "},"suffix":{"ja":" variants","en":" variants"}},{"value":12996649,"unit":null,"high":null,"prefix":{"ja":"アフリカ人集団: ","en":"African population: "},"suffix":{"ja":" variants","en":" variants"}},{"value":19056190,"unit":null,"high":null,"prefix":{"ja":"多祖先集団: ","en":"Multi-ancestry population: "},"suffix":{"ja":" variants","en":" variants"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"zip","label":{"en":"ZIP"}}]}]}