{"total":1008,"page":1,"pageCount":51,"query":"","hits":[{"id":"JGAD001144","secondaryIds":[],"research":"hum0611","url":"https://humandbs.dbcls.jp/dataset/JGAD001144","datePublished":"2026-11-10","dateModified":"2026-11-10","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"造血器疾患罹患者\n- 慢性Graft-versus-host disease（GVHD）有：3症例\n- 慢性GVHD無：3症例\n末梢血：合計12検体\n- CD4+T細胞：6検体\n- CD8+T細胞：6検体","en":"Patients with hematologic disorders\n- cGVHD+: 3 cases\n- cGVHD–: 3 cases\nA total of 12 peripheral blood samples\n- CD4+ T-cell: 6 samples\n- CD8+ T-cell: 6 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"T860","label":{"ja":"骨髄移植の拒絶反応","en":"Bone-marrow transplant rejection"}}],"name":{"ja":"慢性移植片対宿主病（GVHD）","en":"chronic graft-versus-host disease (cGVHD)"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血より分離したCD4+T細胞およびCD8+T細胞から抽出したRNA","en":"RNA extracted from CD4+ and CD8+ T-cell isolated from peripheral blood"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"cd4-t-cell","label":{"ja":"CD4 陽性 T 細胞","en":"CD4+ T cell"}},{"code":"cd8-t-cell","label":{"ja":"CD8 陽性 T 細胞","en":"CD8+ T cell"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nextera-xt-dna-library-prep-kit","label":{"en":"Nextera XT DNA Library Prep Kit"}},{"code":"idt-for-illumina-dna-rna-ud-indexes","label":{"en":"IDT for Illumina DNA/RNA UD Indexes"}},{"code":"smart-seq-mrna","label":{"en":"SMART-Seq mRNA"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"Tagmentation（Nextera XT DNA Library Prep Kit）","en":"Tagmentation (Nextera XT DNA Library Prep Kit)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"慢性GVHD：1症例 合計4検体\n- in vitro Fisetin投与有の末梢血より分離したCD4+T細胞およびCD8+T細胞\n- in vitro Fisetin投与無の末梢血より分離したCD4+T細胞およびCD8+T細胞","en":"cGVHD: 1 case, total 4 samples\n- in vitrofisetin-treated CD4+ and CD8+ T-cell from peripheral blood\n- in vitro fisetin-untreated CD4+ and CD8+ T-cell from peripheral blood"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"T860","label":{"ja":"骨髄移植の拒絶反応","en":"Bone-marrow transplant rejection"}}],"name":{"ja":"慢性移植片対宿主病（GVHD）","en":"chronic graft-versus-host disease (GVHD)"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血より分離したCD4+T細胞およびCD8+T細胞から抽出したRNA","en":"RNA extracted from CD4+ and CD8+ T-cell isolated from peripheral blood"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"cd4-t-cell","label":{"ja":"CD4 陽性 T 細胞","en":"CD4+ T cell"}},{"code":"cd8-t-cell","label":{"ja":"CD8 陽性 T 細胞","en":"CD8+ T cell"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nextera-xt-dna-library-prep-kit","label":{"en":"Nextera XT DNA Library Prep Kit"}},{"code":"idt-for-illumina-dna-rna-ud-indexes","label":{"en":"IDT for Illumina DNA/RNA UD Indexes"}},{"code":"smart-seq-mrna","label":{"en":"SMART-Seq mRNA"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"Tagmentation（Nextera XT DNA Library Prep Kit）","en":"Tagmentation (Nextera XT DNA Library Prep Kit)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":116638050295,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD000989","secondaryIds":[],"research":"hum0231","url":"https://humandbs.dbcls.jp/dataset/JGAD000989","datePublished":"2026-11-06","dateModified":"2026-11-06","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS\n（RNA-seq、ChIP-seq）","en":"NGS\n（RNA-seq, ChIP-seq）"}}],"experiments":[{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"COVID19重症化関連多型を有しない健常人ドナー2名由来のiPS細胞（ゲノム編集株を含む）から分化させた単球およびマクロファージ\n- 39検体","en":"Monocytes and macrophages differentiated from iPS cells (including genome-edited strains) derived from two healthy donors\n- 39 samples"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":2,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"健常人ドナー由来のiPS細胞（ゲノム編集株を含む）から分化させた単球およびマクロファージから抽出したRNA","en":"RNAs extracted from monocytes and macrophages differentiated from iPS cells (including genome-edited strains) derived from healthy donors"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"monocyte","label":{"ja":"単球","en":"Monocyte"}},{"code":"macrophage","label":{"ja":"マクロファージ","en":"macrophage"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"thruplex-dna-seq-kit","label":{"en":"ThruPLEX DNA-Seq Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化（Covaris M220）","en":"Ultrasonic fragmentation (Covaris M220)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-nextseq-500","label":{"en":"Illumina NextSeq 500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":75,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"ChIP-seq","en":"ChIP-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"COVID19重症化関連多型を有しない健常人ドナー2名由来のiPS細胞（ゲノム編集株を含む）から分化させたマクロファージ\n- 37検体","en":"Macrophages differentiated from iPS cells (including genome-edited strains) derived from two healthy donors\n- 37 samples"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":2,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"マクロファージから抽出したDNAに対し、抗H3K27ac抗体、抗H3K4me1抗体、抗CTCF抗体、抗SMC1A抗体、抗IRF8抗体、抗PU1抗体、抗MAFB抗体、もしくは抗BCL6抗体を用いて免疫沈降","en":"DNAs extracted from macrophages differentiated from iPS cells, and immunoprecipitated with anti-H3K27ac, H3K4me1, CTCF, SMC1A, IRF8, PU1, MAFB or BCL6 antibodies."}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"macrophage","label":{"ja":"マクロファージ","en":"macrophage"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"chip-seq","label":{"en":"ChIP-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"thruplex-dna-seq-kit","label":{"en":"ThruPLEX DNA-Seq Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-nextseq-500","label":{"en":"Illumina NextSeq 500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":75,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":93772635968,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"gzip","label":{"en":"GZIP"}}]},{"id":"JGAD001079","secondaryIds":[],"research":"hum0574","url":"https://humandbs.dbcls.jp/dataset/JGAD001079","datePublished":"2026-11-06","dateModified":"2026-11-06","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS）","en":"NGS (WGS)"}}],"experiments":[{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"大腸がん（ICD10：C189）：32症例\n新鮮凍結検体\n腫瘍組織：32検体\n非腫瘍組織（非がん部大腸粘膜組織）：32検体","en":"colorectal cancer (ICD10: C189): 32cases\nfresh-frozen specimens\n- tumor tissues: 32 samples\n- non-tumor tissues (non-neoplastic colorectal mucosa): 32 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C189","label":{"ja":"結腸，部位不明","en":"Malignant neoplasm: Colon, unspecified"}}],"name":{"ja":"大腸がん","en":"colorectal cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":32,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から抽出したDNA","en":"DNA extracted from tumor and non-tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"colorectum","label":{"ja":"大腸","en":"Colorectum"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-dna-pcr-free-library-prep-kit","label":{"en":"TruSeq DNA PCR-Free Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":4509776560267,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD001103","secondaryIds":[],"research":"hum0257","url":"https://humandbs.dbcls.jp/dataset/JGAD001103","datePublished":"2026-11-05","dateModified":"2026-11-05","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"膵がん：11症例\n- 腫瘍組織から樹立したオルガノイド：11検体\n膵管内乳頭粘液性腫瘍 （IPMN）由来の膵がん：2症例\n- 腫瘍組織から樹立したオルガノイド：2検体\nIPMN：3症例\n- IPMN病変から樹立したオルガノイド：3検体\n非腫瘍性疾患：1症例\n- 非腫瘍性膵臓（非がん、非IPMN）由来のオルガノイド：1検体","en":"Pancreatic cancer: 11 cases\n- organoids derived from tumor tissues: 11 samples\nintraductal papillary mucinous neoplasm (IPMN): 2 cases\n- organoids derived from tumor tissues: 2 samples\nIPMN-derived pancreatic cancers: 3 cases\n- organoids derived from tumor tissues: 3 samples\nNon-tumor pancreatic tissue: 1 case\n- organoids derived from pancreatic tissue: 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C259","label":{"ja":"膵，部位不明","en":"Malignant neoplasm: Pancreas, unspecified"}}],"name":{"ja":"膵がん","en":"pancreatic Pancreatic cancer"}},{"terms":[{"code":"D136","label":{"ja":"膵","en":"Benign neoplasm: Pancreas"}}],"name":{"ja":"膵管内乳頭粘液性腫瘍","en":"intraductal papillary mucinous neoplasm"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":17,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から樹立したオルガノイドより抽出したRNA","en":"RNAs extracted from organoids established from pancreatic tumors or non-tumors"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"pancreas","label":{"ja":"膵臓","en":"Pancreas"}},{"code":"organoid","label":{"ja":"オルガノイド","en":"Organoid"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"long-read-rna-seq","label":{"en":"Long read RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ligation-sequencing-kit-sqk-lsk110","label":{"en":"Ligation Sequencing Kit (SQK-LSK110)"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"g-TUBE（Covaris）","en":"g-TUBE (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"oxford-nanopore-technologies-minion","label":{"en":"Oxford Nanopore Technologies MinION"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":830,"unit":"bp","high":null,"suffix":{"ja":"（平均）","en":" (Mean)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":440674743806,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD001127","secondaryIds":[],"research":"hum0294","url":"https://humandbs.dbcls.jp/dataset/JGAD001127","datePublished":"2026-11-02","dateModified":"2026-11-02","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scTCR-seq）","en":"NGS (scRNA-seq, scTCR-seq)"}}],"experiments":[{"label":{"ja":"scRNA-seq + scTCR-seq","en":"scRNA-seq + scTCR-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"切除不能進行・再発胃がん：12症例\n切除不能進行・再発食道胃接合部がん：2症例\n- 治療前（14検体：胃がん12、食道胃接合部がん2）、治療中（12検体：胃がん10、食道胃接合部がん2）、および増悪時（9検体：胃がん7、食道胃接合部がん2）の腫瘍組織","en":"advanced gastric cancer: 12 cases\nadvanced gastroesophageal junction (GEJ) cancer: 2 cases\n- tumor specimens at three time points: before treatment (14 samples: 12 gastric, 2 GEJ), during treatment (12 samples: 10 gastric, 2 GEJ), and at disease progression (9 samples: 7 gastric, 2 GEJ)"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C158","label":{"ja":"食道の境界部病巣","en":"Malignant neoplasm: Overlapping lesion of oesophagus"}}],"name":{"ja":"食道胃接合部がん","en":"gastroesophageal junction cancer"}},{"terms":[{"code":"C169","label":{"ja":"胃，部位不明","en":"Malignant neoplasm: Stomach, unspecified"}}],"name":{"ja":"胃がん","en":"gastric cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":14,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織より単離した細胞から抽出したRNA","en":"RNA extracted from single cells isolated from tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"stomach","label":{"ja":"胃","en":"Stomach"}},{"code":"esophagus","label":{"ja":"食道","en":"Esophagus"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}},{"code":"sctcr-seq","label":{"ja":"scTCR-seq","en":"scTCR-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":28,"unit":"bp","high":null,"suffix":{"ja":" (read1)","en":" (read1)"}},{"value":90,"unit":"bp","high":null,"suffix":{"ja":" (read2)","en":" (read2)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":1294498162792,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD000909","secondaryIds":[],"research":"hum0489","url":"https://humandbs.dbcls.jp/dataset/JGAD000909","datePublished":"2026-10-30","dateModified":"2026-10-30","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Exome、RNA-seq）","en":"NGS (Exome, RNA-seq)"}}],"experiments":[{"label":{"ja":"WES","en":"WES"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"粘液型脂肪肉腫：43症例、腫瘍組織：43検体","en":"myxoid liposarcoma: 43 cases, tumor tissue: 43 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C49","label":{"ja":"その他の結合組織及び軟部組織の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other connective and soft tissue"}}],"name":{"ja":"粘液型脂肪肉腫","en":"myxoid liposarcoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":43,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織から抽出したDNA","en":"DNA extracted from tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"sureselect-human-all-exon-v7","label":{"en":"SureSelect Human All Exon V7"}},{"code":"nebnext-ultra-ii-fs-dna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra II FS DNA Library Prep Kit for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"WES","en":"WES"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"粘液型脂肪肉腫細胞株（402-91、1955-91、2645-94）：3検体","en":"myxoid liposarcoma cell-line (402-91, 1955-91, 2645-94): 3 samples"}},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":3,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"細胞株から抽出したDNA","en":"DNA extracted from cell-line cells"}},{"key":"cell-line","label":{"ja":"細胞株","en":"Cell line"},"type":"vocabulary","terms":[{"code":"402-91","label":{"en":"402-91"}},{"code":"1955-91","label":{"en":"1955-91"}},{"code":"2645-94","label":{"en":"2645-94"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":"402-91、1955-91、2645-94：分譲により入手\n1. Genes Chromosomes Cancer. 1992;5(4):278-85.\n2. Int J Cancer. 1999 Sep 24;83(1):30-3.","en":"402-91, 1955-91, 2645-94: acquired via gift\n1. Genes Chromosomes Cancer. 1992;5(4):278-85.\n2. Int J Cancer. 1999 Sep 24;83(1):30-3."}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"sureselect-human-all-exon-v6","label":{"en":"SureSelect Human All Exon V6"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"粘液型脂肪肉腫：72症例","en":"myxoid liposarcoma: 72 cases"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C49","label":{"ja":"その他の結合組織及び軟部組織の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other connective and soft tissue"}}],"name":{"ja":"粘液型脂肪肉腫","en":"myxoid liposarcoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":72,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織から抽出したRNA","en":"RNA extracted from tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-rna-exome","label":{"en":"TruSeq RNA Exome"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"化学的断片化","en":"Chemical fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-2500","label":{"en":"Illumina HiSeq 2500"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":980151244409,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD001129","secondaryIds":[],"research":"hum0612","url":"https://humandbs.dbcls.jp/dataset/JGAD001129","datePublished":"2026-10-30","dateModified":"2026-10-30","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Targeted DNA-seq、Targeted RNA-seq）","en":"NGS (Targeted DNA-seq, Targeted RNA-seq)"}}],"experiments":[{"label":{"ja":"vLAS (very long amplicon sequencing)","en":"vLAS (very long amplicon sequencing)"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"色素性乾皮症：1症例\n末梢血DNA：1検体","en":"xeroderma pigmentosum: 1case\nperipheral blood DNA: 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"Q821","label":{"ja":"色素性乾皮症","en":"Xeroderma pigmentosum"}}],"name":{"ja":"色素性乾皮症","en":"xeroderma pigmentosum"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"ERCC4遺伝子の深部イントロンに新規のスプライシング変異　NC_000016.10(NM_005236.3):c.207+196T>A　が同定されタイプFと診断された検体の末梢血DNAを約20kbのLong-PCR setで増幅し、対象遺伝子のイントロンを含む全ゲノム領域をカバー、アンプリコンをプールした。","en":"Genetic testing was performed and a novel splicing variant, NC_000016.10(NM_005236.3):c.207+196T>A, was identified in a deep intron of the ERCC4 gene. We amplified peripheral blood DNA using a long PCR set of approximately 20 kb, which covered the entire genomic region, including the introns of the target gene."}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-dna-sequencing","label":{"en":"Targeted DNA sequencing"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"ERCC4遺伝子","en":"ERCC4 gene"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"illumina-dna-prep","label":{"ja":"Illumina DNA Prep","en":"Illumina DNA Prep"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-miseq","label":{"en":"Illumina MiSeq"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":250,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"rLAS (RNA long amplicon sequencing)","en":"rLAS (RNA long amplicon sequencing)"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"色素性乾皮症：1症例\n全血より分離した末梢単核球：1検体","en":"xeroderma pigmentosum: 1case\nPeripheral mononuclear cells isolated from whole blood: 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"Q821","label":{"ja":"色素性乾皮症","en":"Xeroderma pigmentosum"}}],"name":{"ja":"色素性乾皮症","en":"xeroderma pigmentosum"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"全血より末梢単核球を分離。Trizol で全RNAを抽出しoligo dTプライマーで1本鎖cDNAを作成。これを鋳型にERCC4遺伝子の全長ｍRNAをLong RT-PCRで増幅した。","en":"Peripheral mononuclear cells were isolated from whole blood. Total RNA was extracted using Trizol and single-stranded cDNA was synthesized using oligo-dT primers. The full-length mRNA of the ERCC4 gene was then amplified by Long RT-PCR using this as a template."}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"pbmc","label":{"ja":"末梢血単核球 (PBMC)","en":"PBMC"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-rna-sequencing","label":{"ja":"Targeted RNA sequencing","en":"Targeted RNA sequencing"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"ERCC4遺伝子","en":"ERCC4 gene"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"illumina-dna-prep","label":{"ja":"Illumina DNA Prep","en":"Illumina DNA Prep"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-miseq","label":{"en":"Illumina MiSeq"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":250,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":225219850,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD001128","secondaryIds":[],"research":"hum0615","url":"https://humandbs.dbcls.jp/dataset/JGAD001128","datePublished":"2026-10-26","dateModified":"2026-10-26","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Exome）","en":"NGS (Exome)"}}],"experiments":[{"label":{"ja":"WES","en":"WES"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"胆管内乳頭状腫瘍：10症例\n腫瘍組織：22検体、非腫瘍組織：10検体","en":"IPNB: 10 cases\ntumor tissues: 22 samples, non-tumor tissues: 10 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"D376","label":{"ja":"肝，胆のう＜嚢＞及び胆管","en":"Neoplasm of uncertain or unknown behaviour: Liver, gallbladder and bile ducts"}}],"name":{"ja":"胆管内乳頭状腫瘍（intraductal papillary neoplasm of the bile duct；IPNB）","en":"intraductal papillary neoplasm of the bile duct (IPNB)"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":10,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から抽出したDNA","en":"DNAs extracted from tumor tissues and non-tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"twist-exome-2-0-panel","label":{"ja":"Twist Exome 2.0 Panel","en":"Twist Exome 2.0 Panel"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":167161561376,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD001125","secondaryIds":[],"research":"hum0030","url":"https://humandbs.dbcls.jp/dataset/JGAD001125","datePublished":"2026-10-23","dateModified":"2026-10-23","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"Xenium In Situ Gene Expression、NGS（RNA-seq）","en":"Xenium In Situ Gene Expression, NGS (RNA-seq)"}}],"experiments":[{"label":{"ja":"Xenium In Situ Gene Expression","en":"Xenium In Situ Gene Expression"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮がん肉腫（UCS）：8症例\n腫瘍組織（FFPE）：8検体","en":"Uterine carcinosarcoma (UCS): 8 cases\ntumor tissues (FFPE): 8 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C55","label":{"ja":"子宮の悪性新生物＜腫瘍＞，部位不明","en":"Malignant neoplasm of uterus, part unspecified"}}],"name":{"ja":"子宮がん肉腫","en":"Uterine carcinosarcoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":8,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sex","label":{"ja":"性別","en":"Sex"},"type":"vocabulary","terms":[{"code":"female","label":{"ja":"女性","en":"Female"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織（FFPE）","en":"tumor tissues (FFPE)"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"uterus","label":{"ja":"子宮","en":"Uterus"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"330遺伝子カスタムパネル（Xenium Human Breast Gene Expression Panel 280遺伝子＋子宮がん肉腫関連50遺伝子）","en":"330-gene custom panel (Xenium Human Breast Gene Expression Panel: 280 genes + 50 uterine carcinosarcoma-related genes)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"xenium-slides-sample-prep-reagents","label":{"en":"Xenium Slides & Sample Prep Reagents"}},{"code":"xenium-decoding-reagents","label":{"en":"Xenium Decoding Reagents"}},{"code":"xenium-decoding-consumables","label":{"en":"Xenium Decoding Consumables"}},{"code":"xenium-cell-segmentation-add-on-kit","label":{"en":"Xenium Cell Segmentation Add-on kit"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"10x-genomics-xenium-analyzer","label":{"en":"10x Genomics Xenium Analyzer"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"xenium-3.0.0.15、xenium-3.2.0.7","en":"xenium-3.0.0.15, xenium-3.2.0.7"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮がん肉腫（UCS）：8症例\n腫瘍組織（FFPE）：60検体","en":"Uterine carcinosarcoma (UCS): 8 cases\ntumor tissues (FFPE): 60 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C55","label":{"ja":"子宮の悪性新生物＜腫瘍＞，部位不明","en":"Malignant neoplasm of uterus, part unspecified"}}],"name":{"ja":"子宮がん肉腫","en":"Uterine carcinosarcoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":8,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sex","label":{"ja":"性別","en":"Sex"},"type":"vocabulary","terms":[{"code":"female","label":{"ja":"女性","en":"Female"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"微小組織切片から抽出したRNA","en":"RNA extracted from microdissected tissue sections"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"uterus","label":{"ja":"子宮","en":"Uterus"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"smart-seq2","label":{"en":"Smart-seq2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"Tn5 transposaseによるタグメンテーション","en":"Tn5 transposase-mediated tagmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-miseq","label":{"en":"Illumina MiSeq"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":75,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":314647537084,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"parquet","label":{"en":"PARQUET"}},{"code":"hdf5","label":{"en":"HDF5"}},{"code":"tiff","label":{"en":"TIFF"}}]},{"id":"JGAD000974","secondaryIds":[],"research":"hum0455","url":"https://humandbs.dbcls.jp/dataset/JGAD000974","datePublished":"2026-04-10","dateModified":"2026-10-22","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS：PromethION）\nNGS（WGS：Novaseq 6000）\nXenium In Situ Gene Expression\nNGS（Visium Spatial Gene Expression）、病理画像\nNGS（snRNA-seq）\nNGS（STOmics）\nSpatial Proteomics","en":"NGS (WGS: PromethION)\nNGS (WGS: Novaseq 6000)\nXenium In Situ Gene Expression\nNGS (Visium Spatial Gene Expression), Histological image\nNGS (snRNA-seq)\nNGS (STOmics)\nSpatial Proteomics"}}],"experiments":[{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：21症例（筑波14例、自治医7例）\n凍結検体 腫瘍組織：21検体\n非腫瘍組織：21検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 21 cases\nfrozen specimens\n- tumor tissues: 21 samples\n- non-tumor tissues: 21 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":21,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"凍結検体の腫瘍組織ならびに非腫瘍組織より抽出したDNA","en":"DNAs extracted from frozen specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"ligation-sequencing-kit-sqk-lsk114","label":{"en":"Ligation Sequencing Kit (SQK-LSK114)"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"oxford-nanopore-technologies-promethion","label":{"en":"Oxford Nanopore Technologies PromethION"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":null},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Guppy（version 6.4.6および6.5.7）、Minimap2（version 2.24）","en":"Guppy (version 6.4.6 and 6.5.7), Minimap2 (version 2.24)"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":null,"en":null}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Modkit（version 0.3.1）","en":"Modkit (version 0.3.1)"}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":null},{"key":"coverage-breadth","label":{"ja":"カバレッジ (割合)","en":"Coverage (breadth)"},"type":"number","numbers":null},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：1症例（筑波1例）\n凍結検体 腫瘍組織：1検体\n非腫瘍組織：1検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 1 case\nfrozen specimens\n- tumor tissues: 1 sample\n- non-tumor tissues: 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"凍結検体の腫瘍組織ならびに非腫瘍組織より抽出したDNA","en":"DNAs extracted from frozen specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-nano-dna-library-prep-kit","label":{"en":"TruSeq Nano DNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化（Covaris）","en":"Ultrasonic fragmentation (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":300,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Xenium In Situ Gene Expression","en":"Xenium In Situ Gene Expression"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：33症例（筑波26例、自治医7例）\nFFPE検体 腫瘍組織：36検体（筑波29検体、自治医7検体）","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 33 cases\nFFPE specimen\n- tumor tissue: 36 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":33,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"FFPE検体","en":"FFPE specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"302遺伝子（Human Lung panel：202遺伝子, カスタム：100遺伝子）","en":"302 genes (Human Lung panel: 202 genes, custom: 100 genes)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"xenium-decoding-consumables","label":{"en":"Xenium Decoding Consumables"}},{"code":"xenium-decoding-reagents","label":{"en":"Xenium Decoding Reagents"}},{"code":"xenium-slides-sample-prep-reagents","label":{"en":"Xenium Slides & Sample Prep Reagents"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"10x-genomics-xenium-analyzer","label":{"en":"10x Genomics Xenium Analyzer"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"xenium-1.3.0.6、xenium-1.4.0.7、xenium-1.7.1.0、xenium-2.0.0.10","en":"xenium-1.3.0.6, xenium-1.4.0.7, xenium-1.7.1.0, xenium-2.0.0.10"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Visium Spatial Gene Expression, Histological image","en":"Visium Spatial Gene Expression, Histological image"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：19症例（筑波12例、自治医7例）\n腫瘍組織：19検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 19 cases\n- tumor tissues: 19 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":19,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織より抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"histological-image","label":{"en":"Histological image"}},{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"sample-processing","label":{"ja":"試料の処理","en":"Sample processing"},"type":"text","text":{"ja":"組織染色: HE染色","en":"Histological staining: hematoxylin-eosin staining"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"visium-spatial-gene-expression","label":{"en":"Visium Spatial Gene Expression"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":null,"en":null}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":118,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"spaceranger-1.3.1","en":"spaceranger-1.3.1"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"snRNA-seq","en":"snRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：6症例（筑波4例、自治医2例）\n腫瘍組織：6検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 6 cases\n- tumor tissues: 6 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織から抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"snrna-seq","label":{"ja":"snRNA-seq","en":"snRNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-nuclei-isolation-kit","label":{"en":"Chromium Nuclei Isolation Kit"}},{"code":"chromium-gem-x-single-cell-3-v4","label":{"en":"Chromium GEM-X Single Cell 3' v4"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":118,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"STOmics","en":"STOmics"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：2症例（筑波2例）\n腫瘍組織：2検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 2 cases\n- tumor tissues: 2 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":2,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織から抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"stereo-seq-transcriptomics-set","label":{"en":"Stereo-Seq Transcriptomics Set"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"上記キットに準拠","en":"included in the above library construction kit"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-t7","label":{"en":"MGI DNBSEQ-T7"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":135,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Xenium In Situ Gene Expression","en":"Xenium In Situ Gene Expression"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：13症例（筑波7例、自治医6例）\nFFPE検体 腫瘍組織：13検体（筑波7検体、自治医6検体）","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 13 cases\nFFPE specimen\n- tumor tissue: 13 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":13,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"FFPE検体","en":"FFPE specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-transcriptomics","label":{"en":"Spatial transcriptomics"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"5099遺伝子\nXenium Prime 5K Human Pan Tissue & Pathways Panel : 5001遺伝子、Add-on custom panels：98遺伝子","en":"5099genes\nXenium Prime 5K Human Pan Tissue & Pathways Panel : 5001 genes, Add-on custom panels：98genes"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"xenium-slides-sample-prep-reagents","label":{"en":"Xenium Slides & Sample Prep Reagents"}},{"code":"xenium-decoding-reagents","label":{"en":"Xenium Decoding Reagents"}},{"code":"xenium-decoding-consumables","label":{"en":"Xenium Decoding Consumables"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"10x-genomics-xenium-analyzer","label":{"en":"10x Genomics Xenium Analyzer"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"xenium-4.0.1.0","en":"xenium-4.0.1.0"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"Spatial Proteomics","en":"Spatial Proteomics"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"肺神経内分泌がん（ICD10：C34）：13症例（筑波7例、自治医6例）\n腫瘍組織：13検体","en":"pulmonary neuroendocrine carcinoma (ICD10: C34): 13 cases\nFFPE specimen\n- tumor tissue: 13 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}}],"name":{"ja":"肺神経内分泌がん","en":"pulmonary neuroendocrine carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":13,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"FFPE検体","en":"FFPE specimen"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"lung","label":{"ja":"肺","en":"Lung"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"spatial-proteomics","label":{"en":"Spatial proteomics"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"79遺伝子","en":"79 genes"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"staining-kit-for-phenocycler","label":{"en":"Staining Kit for PhenoCycler"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"akoya-biosciences-phenocycler","label":{"en":"Akoya Biosciences PhenoCycler"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"PhenoCycler-Fusion Acquisition Software","en":"PhenoCycler-Fusion Acquisition Software"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":8684945874264,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"bed","label":{"en":"BED"}},{"code":"tsv","label":{"en":"TSV"}},{"code":"csv","label":{"en":"CSV"}},{"code":"xlsx","label":{"en":"XLSX"}},{"code":"json","label":{"en":"JSON"}},{"code":"mtx","label":{"en":"MTX"}},{"code":"hdf5","label":{"en":"HDF5"}},{"code":"png","label":{"en":"PNG"}},{"code":"qptiff","label":{"en":"QPTIFF"}},{"code":"tar","label":{"en":"TAR"}}]},{"id":"JGAD001019","secondaryIds":[],"research":"hum0553","url":"https://humandbs.dbcls.jp/dataset/JGAD001019","datePublished":"2026-10-15","dateModified":"2026-10-15","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Exome、RNA-seq）","en":"NGS (Exome, RNA-seq)"}}],"experiments":[{"label":{"ja":"WES","en":"WES"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"大腸がん（ICD10：C18, C78.7）：1症例\n肝臓転移腫瘍組織から樹立したオルガノイド：4検体","en":"colorectal cancer (ICD10: C18, C78.7): 1 case\npatient-derived organoids from liver metastases: 4 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C18","label":{"ja":"結腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of colon"}},{"code":"C787","label":{"ja":"肝及び肝内胆管の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of liver and intrahepatic bile duct"}}],"name":{"ja":"大腸がん","en":"colorectal cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"肝臓転移腫瘍組織から樹立したオルガノイドから抽出したDNA","en":"DNA extracted from patient-derived organoids from liver metastases"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"liver","label":{"ja":"肝臓","en":"Liver"}},{"code":"organoid","label":{"ja":"オルガノイド","en":"Organoid"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"twist-comprehensive-exome-panel","label":{"en":"Twist Comprehensive Exome Panel"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化（Covaris）","en":"Ultrasonic fragmentation (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"大腸がん（ICD10：C18, C78.7）：1症例\n肝臓転移腫瘍組織から樹立したオルガノイド：6検体","en":"colorectal cancer (ICD10: C18, C78.7): 1 case\npatient-derived organoids from liver metastases: 6 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C18","label":{"ja":"結腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of colon"}},{"code":"C787","label":{"ja":"肝及び肝内胆管の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of liver and intrahepatic bile duct"}}],"name":{"ja":"大腸がん","en":"colorectal cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"肝臓転移腫瘍組織から樹立したオルガノイドから抽出したRNA","en":"RNA extracted from patient-derived organoids from liver metastases"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"liver","label":{"ja":"肝臓","en":"Liver"}},{"code":"organoid","label":{"ja":"オルガノイド","en":"Organoid"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-stranded-mrna-library-prep-kit","label":{"en":"TruSeq Stranded mRNA Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"化学的断片化","en":"chemical fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"single-end","label":{"ja":"シングルエンド","en":"Single-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":141975604542,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD001101","secondaryIds":[],"research":"hum0606","url":"https://humandbs.dbcls.jp/dataset/JGAD001101","datePublished":"2026-10-15","dateModified":"2026-10-15","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS）","en":"NGS（WGS）"}}],"experiments":[{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮体がん：1症例\n腫瘍組織（新鮮凍結：1検体、細胞診：1検体）、非腫瘍組織（末梢血：1検体）\n乳がん細胞株由来xenograft：1モデル\n腫瘍組織（新鮮凍結：1検体、細胞診：1検体、セルペレット：1検体）","en":"Endometrial cancer: 1 case\n1 fresh-frozen tumor tissue, 1 cytology specimen, 1 peripheral blood specimen\nBreast cancer cell line-derived xenograft: 1 model\n1 fresh-frozen tumor tissue, 1 cytology specimen, 1 cell pellet"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C541","label":{"ja":"子宮内膜","en":"Malignant neoplasm: Endometrium"}}],"name":{"ja":"子宮体がん","en":"Endometrial cancer"}},{"terms":[{"code":"C509","label":{"ja":"乳房，部位不明","en":"Malignant neoplasm: Breast, unspecified"}}],"name":{"ja":"乳がん","en":"Breast cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sex","label":{"ja":"性別","en":"Sex"},"type":"vocabulary","terms":[{"code":"female","label":{"ja":"女性","en":"Female"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および末梢血から抽出したDNA","en":"DNAs extracted from tumor tissues and peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"uterus","label":{"ja":"子宮","en":"Uterus"}},{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":"乳がん細胞株：BT-474（ATCC ID: HTB-20）","en":"Breast cancer cell line: BT-474 (ATCC ID: HTB-20)"}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"illumina-dna-pcr-free-prep","label":{"en":"Illumina DNA PCR-Free Prep"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"Bead-Linked TransposomesによるTagmentation","en":"Tagmentation by Bead-Linked Transposomes"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":1324828796159,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD001102","secondaryIds":[],"research":"hum0606","url":"https://humandbs.dbcls.jp/dataset/JGAD001102","datePublished":"2026-10-15","dateModified":"2026-10-15","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（RNA-seq）","en":"NGS (RNA-seq)"}}],"experiments":[{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"子宮体がん：1症例\n腫瘍組織（新鮮凍結：1検体、細胞診：1検体）\n乳がん細胞株由来xenograft：1モデル\n腫瘍組織（新鮮凍結：1検体、細胞診：1検体）","en":"Endometrial cancer: 1 case\n1 fresh-frozen tumor tissue, 1 cytology specimen\nBreast cancer cell line-derived xenograft: 1 model\n1 fresh-frozen tumor tissue, 1 cytology specimen"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C541","label":{"ja":"子宮内膜","en":"Malignant neoplasm: Endometrium"}}],"name":{"ja":"子宮体がん","en":"Endometrial cancer"}},{"terms":[{"code":"C509","label":{"ja":"乳房，部位不明","en":"Malignant neoplasm: Breast, unspecified"}}],"name":{"ja":"乳がん","en":"Breast cancer"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":4,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"sample","label":{"ja":"検体数","en":"Sample"}}]},{"key":"sex","label":{"ja":"性別","en":"Sex"},"type":"vocabulary","terms":[{"code":"female","label":{"ja":"女性","en":"Female"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織から抽出したRNA","en":"RNAs extracted from tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"uterus","label":{"ja":"子宮","en":"Uterus"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":"乳がん細胞株：BT-474（ATCC ID: HTB-20）","en":"Breast cancer cell line: BT-474 (ATCC ID: HTB-20)"}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"N/A","en":"N/A"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"illumina-stranded-total-rna-prep-ligation-with-ribo-zero-plus","label":{"en":"Illumina Stranded Total RNA Prep, Ligation with Ribo-Zero Plus"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"専用試薬存在下での加熱によるRNA断片化","en":"Heat treatment with reagents"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":100,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":30288915597,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"JGAD001060","secondaryIds":[],"research":"hum0335","url":"https://humandbs.dbcls.jp/dataset/JGAD001060","datePublished":"2026-10-08","dateModified":"2026-10-08","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Exome）","en":"NGS (Exome)"}}],"experiments":[{"label":{"ja":"Exome","en":"Exome"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"リンパ増殖性疾患（ICD10：C917）：1症例\n骨髄細胞：1検体","en":"T cell lymphoproliferative disease (ICD10: C917): 1 case\nbone marrow cells: 1 sample"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C917","label":{"ja":"その他のリンパ性白血病","en":"Other lymphoid leukaemia"}}],"name":{"ja":"リンパ増殖性疾患","en":"T cell lymphoproliferative disease"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":1,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"骨髄細胞から抽出したDNA","en":"DNAs extracted from bone marrow cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"bone-marrow","label":{"ja":"骨髄","en":"Bone marrow"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wes","label":{"en":"WES"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"sureselect-human-all-exon-v6","label":{"en":"SureSelect Human All Exon V6"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化","en":"Ultrasonic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":null},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":11034425349,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"E-GEAD-1053","secondaryIds":[],"research":"hum0290","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1053","datePublished":"2025-05-19","dateModified":"2026-10-02","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scATAC-seq）","en":"NGS (scRNA-seq, scATAC-seq)"}}],"experiments":[{"label":{"ja":"scRNA-seq + scATAC-seq","en":"scRNA-seq + scATAC-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：94名（125検体）","en":"94 healthy volunteers (125 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":94,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血より単離した細胞から抽出したDNAおよびRNA","en":"DNAs/RNAs extracted from peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}},{"code":"scatac-seq","label":{"en":"scATAC-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-multiome-atac-gene-expression","label":{"en":"Chromium Next GEM Single Cell Multiome ATAC + Gene Expression"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}},{"code":"illumina-novaseq-x","label":{"en":"Illumina NovaSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":118,"unit":"bp","high":null,"prefix":{"ja":"scRNA-seq: ","en":"scRNA-seq: "}},{"value":99,"unit":"bp","high":null,"prefix":{"ja":"scATAC-seq: ","en":"scATAC-seq: "}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"CellRanger-arc（ver2.0.0）","en":"CellRanger-arc (ver2.0.0)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":346755506422,"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"tar","label":{"en":"TAR"}}]},{"id":"E-GEAD-1058","secondaryIds":[],"research":"hum0290","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1058","datePublished":"2025-05-19","dateModified":"2026-10-02","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"CyTOF","en":"CyTOF"}}],"experiments":[{"label":{"ja":"Mass cytometry (CyTOF)","en":"Mass cytometry (CyTOF)"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者：43名（43検体）","en":"43 healthy volunteers (43 samples)"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":43,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"末梢血から単離した細胞","en":"peripheral blood cells"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cytof","label":{"en":"CyTOF"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"免疫応答に関する30蛋白質","en":"30 proteins related to immune response"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"maxpar-direct-immune-profiling-assay","label":{"en":"Maxpar Direct Immune Profiling Assay"}}]},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"fluidigm-helios","label":{"en":"Fluidigm Helios"}}]},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Maxpar Pathsetter （Cat. #401018）","en":"Maxpar Pathsetter (Cat. #401018)"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":3433906802,"fileFormats":[{"code":"txt","label":{"en":"TXT"}}]},{"id":"JGAD001104","secondaryIds":[],"research":"hum0607","url":"https://humandbs.dbcls.jp/dataset/JGAD001104","datePublished":"2026-10-01","dateModified":"2026-10-01","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（Target Capture）","en":"NGS (Target Capture)"}}],"experiments":[{"label":{"ja":"Targeted DNA sequencing","en":"Targeted DNA sequencing"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"ALK遺伝子異常を有する希少がん（ICD10：C00-C80）：24症例\n血漿中cfDNA：24検体\nバフィーコートより抽出したDNA：19検体","en":"Rare Cancers Harboring ALK Alterations (ICD10: C00-C80): 24 cases\ncfDNA in plasma samples: 24 samples\ngDNA extracted from buffy coats: 19 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C00","label":{"ja":"口唇の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of lip"}},{"code":"C01","label":{"ja":"舌根＜基底＞部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of base of tongue"}},{"code":"C02","label":{"ja":"舌のその他及び部位不明の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified parts of tongue"}},{"code":"C03","label":{"ja":"歯肉の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of gum"}},{"code":"C04","label":{"ja":"口（腔）底の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of floor of mouth"}},{"code":"C05","label":{"ja":"口蓋の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of palate"}},{"code":"C06","label":{"ja":"その他及び部位不明の口腔の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified parts of mouth"}},{"code":"C07","label":{"ja":"耳下腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of parotid gland"}},{"code":"C08","label":{"ja":"その他及び部位不明の大唾液腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified major salivary glands"}},{"code":"C09","label":{"ja":"扁桃の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of tonsil"}},{"code":"C10","label":{"ja":"中咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of oropharynx"}},{"code":"C11","label":{"ja":"鼻＜上＞咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of nasopharynx"}},{"code":"C12","label":{"ja":"梨状陥凹＜洞＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of piriform sinus"}},{"code":"C13","label":{"ja":"下咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of hypopharynx"}},{"code":"C14","label":{"ja":"その他及び部位不明確の口唇，口腔及び咽頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and ill-defined sites in the lip, oral cavity and pharynx"}},{"code":"C15","label":{"ja":"食道の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of oesophagus"}},{"code":"C16","label":{"ja":"胃の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of stomach"}},{"code":"C17","label":{"ja":"小腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of small intestine"}},{"code":"C18","label":{"ja":"結腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of colon"}},{"code":"C19","label":{"ja":"直腸S状結腸移行部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectosigmoid junction"}},{"code":"C20","label":{"ja":"直腸の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of rectum"}},{"code":"C21","label":{"ja":"肛門及び肛門管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of anus and anal canal"}},{"code":"C22","label":{"ja":"肝及び肝内胆管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of liver and intrahepatic bile ducts"}},{"code":"C23","label":{"ja":"胆のう＜嚢＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of gallbladder"}},{"code":"C24","label":{"ja":"その他及び部位不明の胆道の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified parts of biliary tract"}},{"code":"C25","label":{"ja":"膵の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of pancreas"}},{"code":"C26","label":{"ja":"その他及び部位不明確の消化器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and ill-defined digestive organs"}},{"code":"C30","label":{"ja":"鼻腔及び中耳の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of nasal cavity and middle ear"}},{"code":"C31","label":{"ja":"副鼻腔の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of accessory sinuses"}},{"code":"C32","label":{"ja":"喉頭の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of larynx"}},{"code":"C33","label":{"ja":"気管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of trachea"}},{"code":"C34","label":{"ja":"気管支及び肺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bronchus and lung"}},{"code":"C37","label":{"ja":"胸腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thymus"}},{"code":"C38","label":{"ja":"心臓，縦隔及び胸膜の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of heart, mediastinum and pleura"}},{"code":"C39","label":{"ja":"その他及び部位不明確の呼吸器系及び胸腔内臓器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and ill-defined sites in the respiratory system and intrathoracic organs"}},{"code":"C40","label":{"ja":"（四）肢の骨及び関節軟骨の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bone and articular cartilage of limbs"}},{"code":"C41","label":{"ja":"その他及び部位不明の骨及び関節軟骨の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bone and articular cartilage of other and unspecified sites"}},{"code":"C43","label":{"ja":"皮膚の悪性黒色腫","en":"Malignant melanoma of skin"}},{"code":"C44","label":{"ja":"皮膚のその他の悪性新生物＜腫瘍＞","en":"Other malignant neoplasms of skin"}},{"code":"C45","label":{"ja":"中皮腫","en":"Mesothelioma"}},{"code":"C46","label":{"ja":"カポジ＜Kaposi＞肉腫","en":"Kaposi sarcoma"}},{"code":"C47","label":{"ja":"末梢神経及び自律神経系の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of peripheral nerves and autonomic nervous system"}},{"code":"C48","label":{"ja":"後腹膜及び腹膜の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of retroperitoneum and peritoneum"}},{"code":"C49","label":{"ja":"その他の結合組織及び軟部組織の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other connective and soft tissue"}},{"code":"C50","label":{"ja":"乳房の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of breast"}},{"code":"C51","label":{"ja":"外陰（部）の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of vulva"}},{"code":"C52","label":{"ja":"腟の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of vagina"}},{"code":"C53","label":{"ja":"子宮頚部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of cervix uteri"}},{"code":"C54","label":{"ja":"子宮体部の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of corpus uteri"}},{"code":"C55","label":{"ja":"子宮の悪性新生物＜腫瘍＞，部位不明","en":"Malignant neoplasm of uterus, part unspecified"}},{"code":"C56","label":{"ja":"卵巣の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of ovary"}},{"code":"C57","label":{"ja":"その他及び部位不明の女性生殖器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified female genital organs"}},{"code":"C58","label":{"ja":"胎盤の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of placenta"}},{"code":"C60","label":{"ja":"陰茎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of penis"}},{"code":"C61","label":{"ja":"前立腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of prostate"}},{"code":"C62","label":{"ja":"精巣＜睾丸＞の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of testis"}},{"code":"C63","label":{"ja":"その他及び部位不明の男性生殖器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified male genital organs"}},{"code":"C64","label":{"ja":"腎盂を除く腎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of kidney, except renal pelvis"}},{"code":"C65","label":{"ja":"腎盂の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of renal pelvis"}},{"code":"C66","label":{"ja":"尿管の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of ureter"}},{"code":"C67","label":{"ja":"膀胱の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of bladder"}},{"code":"C68","label":{"ja":"その他及び部位不明の尿路の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and unspecified urinary organs"}},{"code":"C69","label":{"ja":"眼及び付属器の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of eye and adnexa"}},{"code":"C70","label":{"ja":"髄膜の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of meninges"}},{"code":"C71","label":{"ja":"脳の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of brain"}},{"code":"C72","label":{"ja":"脊髄，脳神経及びその他の中枢神経系の部位の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of spinal cord, cranial nerves and other parts of central nervous system"}},{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}},{"code":"C74","label":{"ja":"副腎の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of adrenal gland"}},{"code":"C75","label":{"ja":"その他の内分泌腺及び関連組織の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other endocrine glands and related structures"}},{"code":"C76","label":{"ja":"その他及び部位不明確の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of other and ill-defined sites"}},{"code":"C77","label":{"ja":"リンパ節の続発性及び部位不明の悪性新生物＜腫瘍＞","en":"Secondary and unspecified malignant neoplasm of lymph nodes"}},{"code":"C78","label":{"ja":"呼吸器及び消化器の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of respiratory and digestive organs"}},{"code":"C79","label":{"ja":"その他の部位及び部位不明の続発性悪性新生物＜腫瘍＞","en":"Secondary malignant neoplasm of other and unspecified sites"}},{"code":"C80","label":{"ja":"悪性新生物＜腫瘍＞，部位が明示されていないもの","en":"Malignant neoplasm, without specification of site"}}],"name":{"ja":"ALK遺伝子異常を有する希少がん","en":"Rare Cancers Harboring ALK Alterations"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":24,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"血漿中cfDNAおよびgDNA","en":"cfDNA in plasma samples or gDNA in buffy coats"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"buffy-coat","label":{"ja":"バフィーコート","en":"buffy coat"}},{"code":"plasma","label":{"ja":"血漿","en":"Plasma"}},{"code":"cfdna","label":{"en":"cfDNA"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"targeted-dna-sequencing","label":{"en":"Targeted DNA sequencing"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"737遺伝子（Todai OncoPanel version 6）","en":"737 genes (Todai OncoPanel version 6)"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"twist-library-preparation-ef-kit","label":{"en":"Twist Library Preparation EF Kit"}},{"code":"twist-umi-adapter-system","label":{"en":"Twist UMI Adapter System"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":139.9,"unit":"bp","high":null,"suffix":{"ja":" (平均)","en":" (Mean)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"bwa mem","en":"bwa mem"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"平均 32.2","en":"32.2 on average"}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":1616.9,"unit":"x","high":null,"suffix":{"ja":" (平均)","en":" (Mean)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":573709681062,"fileFormats":[{"code":"bam","label":{"en":"BAM"}}]},{"id":"JGAD001048","secondaryIds":[],"research":"hum0567","url":"https://humandbs.dbcls.jp/dataset/JGAD001048","datePublished":"2026-09-24","dateModified":"2026-09-24","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（WGS、RNA-seq）","en":"NGS (WGS, RNA-seq)"}}],"experiments":[{"label":{"ja":"WGS","en":"WGS"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"稀な肝希少疾患、特にFALDを背景に発症した肝がん（ICD10：C220）：13 症例\n腫瘍組織：13検体\n非腫瘍肝組織：13検体","en":"liver cancer caused by rare liver diseases, especially FALD (ICD10: C220): 13 cases\ntumor tissue: 13 samples\nnon-tumor tissue: 13 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C220","label":{"ja":"肝細胞癌","en":"Malignant neoplasm: Liver cell carcinoma"}}],"name":{"ja":"稀な肝希少疾患、特にFALDを背景に発症した肝がん","en":"liver cancer caused by rare liver diseases, especially FALD"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":13,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から抽出したDNA","en":"DNAs extracted from tumor and non-tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"liver","label":{"ja":"肝臓","en":"Liver"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"wgs","label":{"en":"WGS"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"truseq-dna-pcr-free-library-prep-kit","label":{"en":"TruSeq DNA PCR-Free Library Prep Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"超音波断片化（Covaris）","en":"Ultrasonic fragmentation (Covaris)"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}},{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"BWA-MEM","en":"BWA-MEM"}},{"key":"read-deduplication","label":{"ja":"リード重複除去","en":"Read deduplication"},"type":"text","text":{"ja":"Picard MarkDuplicates (Duplication rate: approx. 15%)","en":"Picard MarkDuplicates (Duplication rate: approx. 15%)"}},{"key":"calibration-for-re-alignment-and-base-quality","label":{"ja":"再アライメント・塩基品質補正","en":"Realignment and base quality recalibration"},"type":"text","text":{"ja":"GATK BQSR","en":"GATK BQSR"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":"MAPQ >= 20","en":"MAPQ >= 20"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"・MarkIlluminaAdapters および SamToFastq を用いて、クリッピングパラメータを設定し、アダプターをトリミング\n・MergeBamAlignment (-CLIP_OVERLAPPING_READS true) により重複リードをクリッピング\n・GATK MarkDuplicatesを用いて重複リードをフィルタリング\n・dbSNPおよび既知のindelリソースに基づく塩基品質スコアの再校正（BQSR）\n・GATK FilterMutectCallsのデフォルトパイプラインを用いてアーティファクトおよびコンタミネーションをフィルタリング\n・Funcotatorにより機能アノテーション中のフィルタリング済みバリアントを除去\n*パイプラインの詳細な設定およびパラメータについては、DOI: 10.1097/HEP.0000000000001693のSupplementary Methodsを参照","en":"- Adapter trimming via MarkIlluminaAdapters and SamToFastq with clipping parameters.\n- Overlapping read clipping performed by MergeBamAlignment (-CLIP_OVERLAPPING_READS true).\n- Duplicate read filtering using GATK MarkDuplicates.\n- Base quality score recalibration (BQSR) against dbSNP and known indel resources.\n- Artifact and contamination filtering using GATK FilterMutectCalls default pipeline.\n- Filtered variant removal during functional annotation via Funcotator.\ncf. Supplementary Methods of DOI: 10.1097/HEP.0000000000001693 for detailed pipeline configurations and parameters"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"GATK Mutect2 (v4.6.2.0) + Funcotator\nNextflow oncoanalyser (v2.1.0) / PURPLE\nNextflow oncoanalyser (v2.1.0) + R (StructuralVariantAnnotation / VariantAnnotation)","en":"GATK Mutect2 (v4.6.2.0) + Funcotator\nNextflow oncoanalyser (v2.1.0) / PURPLE\nNextflow oncoanalyser (v2.1.0) + R (StructuralVariantAnnotation / VariantAnnotation)"}},{"key":"coverage-depth","label":{"ja":"カバレッジ (深度)","en":"Coverage (depth)"},"type":"number","numbers":[{"value":100,"unit":"x","high":null}]},{"key":"variant-number","label":{"ja":"バリアント数","en":"Variant count"},"type":"number","numbers":[{"value":1010,"unit":null,"high":null,"suffix":{"ja":" Indels (中央値)","en":" Indels (Median)"}},{"value":189,"unit":null,"high":2786,"suffix":{"ja":" Indels (範囲)","en":" Indels (Range)"}},{"value":64,"unit":null,"high":null,"suffix":{"ja":" SVs (中央値)","en":" SVs (Median)"}},{"value":2,"unit":null,"high":160,"suffix":{"ja":" SVs (範囲)","en":" SVs (Range)"}},{"value":5373,"unit":null,"high":null,"suffix":{"ja":" SNVs (中央値)","en":" SNVs (Median)"}},{"value":2000,"unit":null,"high":12634,"suffix":{"ja":" SNVs (範囲)","en":" SNVs (Range)"}}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]},{"label":{"ja":"RNA-seq","en":"RNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"稀な肝希少疾患、特にFALDを背景に発症した肝がん（ICD10：C220）：13 症例\n腫瘍組織：13検体\n非腫瘍肝組織：13検体","en":"liver cancer caused by rare liver diseases, especially FALD (ICD10: C220): 13 cases\ntumor tissue: 13 samples\nnon-tumor tissue: 13 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C220","label":{"ja":"肝細胞癌","en":"Malignant neoplasm: Liver cell carcinoma"}}],"name":{"ja":"稀な肝希少疾患、特にFALDを背景に発症した肝がん","en":"liver cancer caused by rare liver diseases, especially FALD"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":13,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織および非腫瘍組織から抽出したRNA","en":"RNAs extracted from tumor and non-tumor tissues"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"liver","label":{"ja":"肝臓","en":"Liver"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"mixed","label":{"ja":"混在","en":"Mixed"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"rna-seq","label":{"en":"RNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"nebnext-ultra-ii-directional-rna-library-prep-kit-for-illumina","label":{"en":"NEBNext Ultra II Directional RNA Library Prep Kit for Illumina"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"化学的断片化（二価カチオン、熱処理）","en":"Chemical fragmentation [divalent cations, heat treatment]"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-novaseq-6000","label":{"en":"Illumina NovaSeq 6000"}},{"code":"illumina-novaseq-x-plus","label":{"en":"Illumina NovaSeq X Plus"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":150,"unit":"bp","high":null}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"STAR (v2.7.10a)","en":"STAR (v2.7.10a)"}},{"key":"mapping-quality","label":{"ja":"マッピング品質","en":"Mapping quality"},"type":"text","text":{"ja":">91%","en":">91%"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"None (RSEM internally handles multi-mapping reads using EM algorithm)","en":"None (RSEM internally handles multi-mapping reads using EM algorithm)"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"STAR (v2.7.10a) + RSEM (v1.3.3)","en":"STAR (v2.7.10a) + RSEM (v1.3.3)"}},{"key":"gene-number","label":{"ja":"遺伝子数","en":"Gene count"},"type":"number","numbers":[{"value":61552,"unit":null,"high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":4643846600967,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}},{"code":"maf","label":{"en":"MAF"}},{"code":"csv","label":{"en":"CSV"}}]},{"id":"JGAD001086","secondaryIds":[],"research":"hum0600","url":"https://humandbs.dbcls.jp/dataset/JGAD001086","datePublished":"2026-09-18","dateModified":"2026-09-18","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"controlled-access-type-1","label":{"ja":"制限公開（Type I）","en":"Controlled-access (Type I)"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq）","en":"NGS (scRNA-seq)"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"甲状腺未分化がん（ICD10：C73）：3症例\n腫瘍組織：3検体\n甲状腺乳頭がん（ICD10：C73）：3症例\n腫瘍組織：3検体","en":"undifferentiated thyroid carcinoma (ICD10: C73): 3 cases\ntumor tissue: 3 samples\npapillary thyroid carcinoma (ICD10: C73): 3 cases\ntumor tissue: 3 samples"}},{"key":"disease","label":{"ja":"疾患","en":"Disease"},"type":"disease","diseases":[{"terms":[{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}}],"name":{"ja":"甲状腺未分化がん","en":"undifferentiated thyroid carcinoma"}},{"terms":[{"code":"C73","label":{"ja":"甲状腺の悪性新生物＜腫瘍＞","en":"Malignant neoplasm of thyroid gland"}}],"name":{"ja":"甲状腺乳頭がん","en":"papillary thyroid carcinoma"}}]},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"affected","label":{"ja":"罹患","en":"Affected"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"population","label":{"ja":"対象集団","en":"Population"},"type":"vocabulary","terms":[{"code":"japanese","label":{"ja":"日本人","en":"Japanese"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"腫瘍組織より単離した細胞から抽出したRNA","en":"RNA extracted from a single cell isolated from tumor tissues"}},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"tumor","label":{"ja":"腫瘍","en":"Tumor"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-3-v3-1","label":{"en":"Chromium Next GEM Single Cell 3' v3.1"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"illumina-hiseq-x","label":{"en":"Illumina HiSeq X"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":90,"unit":"bp","high":null}]},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}}]}]}],"dataVolume":259466566878,"fileFormats":[{"code":"fastq","label":{"en":"FASTQ"}}]},{"id":"E-GEAD-1108","secondaryIds":[],"research":"hum0511","url":"https://humandbs.dbcls.jp/dataset/E-GEAD-1108","datePublished":"2026-07-03","dateModified":"2026-09-11","values":[{"key":"access-criteria","label":{"ja":"アクセス制限","en":"Access criteria"},"type":"vocabulary","terms":[{"code":"unrestricted-access","label":{"ja":"非制限公開","en":"Unrestricted-access"}}]},{"key":"type-of-data","label":{"ja":"データの種類","en":"Type of data"},"type":"text","text":{"ja":"NGS（scRNA-seq、scTCR-seq、scCITE-seq）","en":"NGS (scRNA-seq, scTCR-seq, scCITE-seq) processed data"}}],"experiments":[{"label":{"ja":"scRNA-seq","en":"scRNA-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者6名 (JGAD000957/データセット2)\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"6 healthy individuals (JGAD000957/Dataset 2)\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"scrna-seq","label":{"en":"scRNA-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-next-gem-single-cell-5-v2","label":{"en":"Chromium Next GEM Single Cell 5' v2"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":72,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":91,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"scTCR-seq","en":"scTCR-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者6名 (JGAD000957/データセット2)\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"6 healthy individuals (JGAD000957/Dataset 2)\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"tcr-seq","label":{"en":"TCR-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":null,"en":null}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-v-d-j-enrichment-kit-human-t-cell","label":{"en":"Chromium Single Cell V(D)J Enrichment Kit, Human T Cell"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":72,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":91,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":[{"code":"grch38","label":{"en":"GRCh38"}}]},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]},{"label":{"ja":"scCITE-seq","en":"scCITE-seq"},"values":[{"key":"materials-and-participants","label":{"ja":"試料 / 対象者","en":"Materials and participants"},"type":"text","text":{"ja":"健常者6名 (JGAD000957/データセット2)\n70～90歳代: 2名\n100歳代: 2名\n110歳代: 2名","en":"6 healthy individuals (JGAD000957/Dataset 2)\n70s-90s: 2\n100s: 2\n110s: 2"}},{"key":"health-status","label":{"ja":"健康状態","en":"Health status"},"type":"vocabulary","terms":[{"code":"healthy","label":{"ja":"健常","en":"Healthy"}}]},{"key":"subject-count","label":{"ja":"対象者数","en":"Subject count"},"type":"number","numbers":[{"value":6,"unit":null,"high":null}]},{"key":"subject-count-type","label":{"ja":"対象者数の数え方","en":"Counted as"},"type":"vocabulary","terms":[{"code":"individual","label":{"ja":"人数","en":"Individual"}}]},{"key":"age-group","label":{"ja":"年齢層","en":"Age group"},"type":"vocabulary","terms":[{"code":"elderly","label":{"ja":"高齢者","en":"Elderly"}}]},{"key":"sample-description","label":{"ja":"試料説明","en":"Sample description"},"type":"text","text":{"ja":"PMAとイオノマイシンで6時間刺激した末梢血T細胞から抽出したRNA","en":"RNAs extracted from peripheral blood T cells stimulated for 6 hours with PMA and ionomycin"}},{"key":"tissue","label":{"ja":"組織","en":"Tissue"},"type":"vocabulary","terms":[{"code":"peripheral-blood","label":{"ja":"末梢血","en":"Peripheral blood"}},{"code":"t-cell","label":{"ja":"T 細胞","en":"T cell"}}]},{"key":"is-tumor","label":{"ja":"腫瘍 / 非腫瘍","en":"Tumor / normal"},"type":"vocabulary","terms":[{"code":"normal","label":{"ja":"非腫瘍","en":"Normal"}}]},{"key":"sample-provider","label":{"ja":"購入試料の入手元","en":"Sample provider"},"type":"text","text":{"ja":null,"en":null}},{"key":"experimental-method","label":{"ja":"実験方法","en":"Experimental method"},"type":"vocabulary","terms":[{"code":"cite-seq","label":{"en":"CITE-seq"}}]},{"key":"targets","label":{"ja":"対象領域","en":"Target"},"type":"text","text":{"ja":"CD3、CD4、CD8、CD25、CD27、CD28、CD45RA、CD45RO、CD95、TCRD、CCR7、IL7RA、PD-1、CD161、KLRG1、CD56","en":"CD3, CD4, CD8, CD25, CD27, CD28, CD45RA, CD45RO, CD95, TCRD, CCR7, IL7RA, PD-1, CD161, KLRG1, CD56"}},{"key":"reagents","label":{"ja":"試薬キット","en":"Reagent kit"},"type":"vocabulary","terms":[{"code":"chromium-single-cell-5-feature-barcode-library-kit","label":{"en":"Chromium Single Cell 5' Feature Barcode Library Kit"}}]},{"key":"fragmentation","label":{"ja":"断片化","en":"Fragmentation"},"type":"text","text":{"ja":"酵素反応","en":"Enzymatic fragmentation"}},{"key":"platform","label":{"ja":"プラットフォーム","en":"Platform"},"type":"vocabulary","terms":[{"code":"mgi-dnbseq-g400","label":{"en":"MGI DNBSEQ-G400"}}]},{"key":"read-type","label":{"ja":"リードタイプ","en":"Read type"},"type":"vocabulary","terms":[{"code":"paired-end","label":{"ja":"ペアエンド","en":"Paired-end"}}]},{"key":"read-length","label":{"ja":"リード長","en":"Read length"},"type":"number","numbers":[{"value":0,"unit":"bp","high":null,"suffix":{"ja":" (Read1)","en":" (Read1)"}},{"value":15,"unit":"bp","high":null,"suffix":{"ja":" (Read2)","en":" (Read2)"}}]},{"key":"reference-sequence","label":{"ja":"参照ゲノム","en":"Reference genome"},"type":"vocabulary","terms":null},{"key":"mapping","label":{"ja":"マッピング","en":"Mapping"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"filtering","label":{"ja":"QC・フィルタリング","en":"QC and filtering"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"analysis-methods","label":{"ja":"解析方法","en":"Analysis method"},"type":"text","text":{"ja":"Cell Ranger 6.1.2","en":"Cell Ranger 6.1.2"}},{"key":"policies","label":{"ja":"利用ポリシー","en":"Data use policy"},"type":"vocabulary","terms":[{"code":"nbdc-data-sharing-policy-jgap000001","label":{"ja":"NBDC データ共有ポリシー (JGAP000001)","en":"NBDC data sharing policy (JGAP000001)"}},{"code":"jgap000013-policy","label":{"ja":"JGAP000013 Policy","en":"JGAP000013 Policy"}}]}]}],"dataVolume":83780027,"fileFormats":[{"code":"txt","label":{"en":"TXT"}},{"code":"tar","label":{"en":"TAR"}}]}]}