These files were the results of GWAS for body mass index in the Biobank Japan project released via National Bioscience Database Center (NBDC).
File name | Number of samples | Number of variants |
---|---|---|
All_2017_BMI_BBJ_autosome.txt.gz | 158,284 | 5,961,600 |
Male_2017_BMI_BBJ_autosome.txt.gz | 85,894 | 5,961,600 |
Male_2017_BMI_BBJ_Xchromosome.txt.gz | 85,894 | 147,353 |
Female_2017_BMI_BBJ_autosome.txt.gz | 72,390 | 5,961,600 |
Female_2017_BMI_BBJ_Xchromosome.txt.gz | 72,390 | 147,353 |
Number of column | column | description |
---|---|---|
1 | SNP | marker name |
2 | CHR | chromosome |
3 | POS | position (hg19) |
4 | REF | reference allele |
5 | ALT | alternative allele |
6 | Frq | alternative allele frequency |
7 | Rsq | imputation quality |
8 | BETA | beta |
9 | SE | standard error |
10 | P | P-value |
・ Alternative alleles were used as effect alleles.
・ Association analysis was performed using mach2qtl software (Li Y. et al, Genet. Epidemiol. 2010).
The biobank Japan project
National Bioscience Database Center Human Database
RIKEN Center for Integrative Medical Sciences
If you use these date, please cite the following paper:
Akiyama et al. Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.
Nat Genet (2017). doi:10.1038/ng.3951